# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r6r1	338	13.79		
2je6B	250	13.92		
2glwA	92	16.59		
2nn6B	249	25.75		
1qouA	181	27.60	b.17.1.1	23707
2d9rA	104	29.16	b.129.2.1	131350
1mzjA	339	30.90	c.95.1.2,c.95.1.2	79700,79701
3c57A	95	32.05		
1fp2A	352	32.22	a.4.5.29,c.66.1.12	59941,59942
2c2jA	211	35.80		
2ebdA	309	37.25		
1hzpA	335	40.19	c.95.1.2,c.95.1.2	61455,61456
1u0mA	382	41.65	c.95.1.2,c.95.1.2	107557,107558
1hxvA	113	42.83	d.26.1.1	71089
1tedA	393	45.32	c.95.1.2	106807
1rrmA	386	49.61	e.22.1.2	105081
2p58C	116	56.25		
1snlA	103	64.37	a.39.1.7	105820
1uwdA	103	66.75	d.52.8.2	113447
2apjA	260	67.84	c.23.10.7	127128
1vgjA	184	70.64		
1hnjA	317	75.20	c.95.1.2,c.95.1.2	35969,35970
1i86A	389	77.36	c.95.1.2,c.95.1.2	66068,66069
2z90A	161	77.61		
2o09A	189	81.08		
1nkqA	259	81.69	d.177.1.1	103862
2oynA	146	84.52		
2ooiA	162	86.14