# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nn6B 249 2.042 1u0mA 382 3.210 c.95.1.2,c.95.1.2 107557,107558 1snlA 103 3.548 a.39.1.7 105820 1hwxA 501 4.607 c.2.1.7,c.58.1.1 30250,33898 1rhyA 202 4.909 d.14.1.9,d.14.1.9 97491,97492 1qf5A 431 6.754 c.37.1.10 32212 1h6dA 433 7.635 c.2.1.3,d.81.1.5 65656,65657 1uypA 432 13.03 b.29.1.19,b.67.2.3 100176,100177 2r85A 334 14.08 1ordA 730 14.13 c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 1t90A 486 14.85 1kmoA 774 15.12 f.4.3.3 72753 1b7yB 785 15.45 a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 2nvaA 372 17.44 4bcl 366 18.85 1i19A 561 18.90 d.58.32.3,d.145.1.1 61522,61523 1wl4A 397 20.30 1p2xA 159 22.18 a.40.1.1 104062 2dfuA 264 22.58 1nif 340 22.77 1yqyA 523 23.04 d.92.1.14,d.166.1.1 123903,123904 1eps 427 23.14 2bdeA 470 26.09 c.108.1.23 128335 1jr7A 311 26.81 b.82.2.3 63255 2jhmF 218 27.44 1bgpA 309 27.56 a.93.1.1 18690 1j99A 293 28.19 c.37.1.5 71618 4bclA 366 28.86 b.75.1.1 27968 1opcA 110 29.76 a.4.6.1 16231 1xesA 413 30.18 1im4A 221 30.94 e.8.1.7 62581 1w2tA 432 31.38 b.29.1.19,b.67.2.3 120607,120608 1hqsA 423 32.36 c.77.1.1 61154 1a9xA 1058 33.34 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2ebdA 309 33.87 1ig6A 107 34.70 a.4.3.1 62364 1jmuB 666 35.31 2cf8H 257 35.58 2qa1A 500 35.76 1b9kA 238 36.77 b.1.10.1,d.105.1.1 22315,40791 2de0X 526 37.08 1nbaA 264 39.57 c.33.1.3 31753 1cjaA 342 40.06 d.144.1.3 41708 1yppA 286 40.07 b.40.5.1 25407 1mu5A 471 41.24 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1qtsA 247 41.50 b.1.10.1,d.105.1.1 22313,40789 1p9bA 442 43.31 c.37.1.10 94385 1qg8A 255 44.17 c.68.1.1 34505 1yozA 116 44.35 a.253.1.1 123796 2cxaA 256 47.42 d.108.1.6 130993 2pjoA 268 48.89 1ty0A 211 49.40 b.40.2.2,d.15.6.1 107440,107441 3c10A 423 50.59 1ji4A 144 50.60 a.25.1.1 77117 1xmpA 170 52.56 c.23.8.1 115521 1u11A 182 52.57 c.23.8.1 107576 1mc0A 368 53.25 d.110.2.1,d.110.2.1 78937,78938 1ecpA 238 53.77 c.56.2.1 33775 1sw2A 275 54.40 c.94.1.1 106064 1hxvA 113 55.19 d.26.1.1 71089 2c2uA 207 55.26 2a7bA 120 56.00 b.1.10.2 126333 1y791 680 57.69 1v73A 342 58.47 1a4sA 503 58.87 c.82.1.1 35361 2glwA 92 59.34 1esoA 154 59.88 b.1.8.1 22293 1miqA 375 59.96 b.50.1.2 79151 1o7fA 469 59.98 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2qo3A 915 60.17 1gxjA 186 61.96 d.215.1.1 70707 1w36B 1180 63.18 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1vybA 238 65.81 d.151.1.1 108897 1qfcA 306 66.60 d.159.1.1 42077 1bt0A 76 67.91 d.15.1.1 37607 1j3nA 408 68.80 c.95.1.1,c.95.1.1 84074,84075 1lg7A 182 71.06 d.213.1.1 73888 1tf5A 844 71.89 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1ylnA 252 73.47 b.45.2.1,b.45.2.2 123657,123658 1h3qA 140 73.47 d.110.4.3 76652 1xadA 345 74.17 c.77.1.1 35055 1xwwA 157 75.66 2ajfA 597 76.09 d.92.1.5 126882 2f3yA 148 76.57 1mfwA 107 77.17 d.15.11.1 84940 1d8wA 426 77.59 c.1.15.2 29394 1w0dA 337 77.63 c.77.1.1 114060 1udcA 338 78.21 c.2.1.2 29785 1txnA 328 78.45 d.248.1.1 112779 1rk6A 496 79.16 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1qfoA 119 79.93 b.1.1.1 19708 1k7gA 479 80.19 b.80.7.1,d.92.1.6 77279,77280 2cf7A 165 80.40 2imjA 166 81.38 1a3yA 149 85.49 b.60.1.1 27110 2c5aA 379 86.11 c.2.1.2 129894 2ra9A 150 87.35 1z9pA 155 87.69 1attA 421 89.46 e.1.1.1 42638