# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2c2jA	211	18.56		
1qfoA	119	21.58	b.1.1.1	19708
2z90A	161	22.95		
1mzjA	339	28.85	c.95.1.2,c.95.1.2	79700,79701
2glwA	92	30.14		
1u0mA	382	39.14	c.95.1.2,c.95.1.2	107557,107558
1w2tA	432	39.15	b.29.1.19,b.67.2.3	120607,120608
1fo0A	116	42.97	b.1.1.1	20610
2nvaA	372	45.60		
2c2uA	207	45.62		
1rhyA	202	60.96	d.14.1.9,d.14.1.9	97491,97492
1hxvA	113	62.47	d.26.1.1	71089
2nn6B	249	65.51		
2ebdA	309	68.75		
1snlA	103	71.45	a.39.1.7	105820
1z45A	699	72.55	b.30.5.4,c.2.1.2	124427,124428
2c41A	158	73.22		
2r6r1	338	75.23		
1nszA	347	76.15	b.30.5.4	80724
2h6bA	250	76.26		
1a81A	254	83.37	d.93.1.1,d.93.1.1	40507,40508
1mmuA	347	84.05	b.30.5.4	79303
1v77A	212	86.72	c.6.3.2	108402
1o0pA	104	89.10	d.58.7.1	86535