# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2glwA	92	11.61		
2c2jA	211	18.09		
1mzjA	339	19.75	c.95.1.2,c.95.1.2	79700,79701
2z90A	161	19.87		
1hxvA	113	35.09	d.26.1.1	71089
2c2uA	207	38.72		
2vbuA	136	44.18		
2c41A	158	45.43		
2ebdA	309	45.80		
2oynA	146	46.55		
2f2cA	254	50.67	a.74.1.1,a.74.1.1	132805,132806
1x6mA	196	51.68	b.88.1.4	114920
1w2tA	432	52.76	b.29.1.19,b.67.2.3	120607,120608
1u0mA	382	59.76	c.95.1.2,c.95.1.2	107557,107558
2nvaA	372	63.99		
1ji4A	144	67.65	a.25.1.1	77117
2pifA	276	74.02		
2ddzA	190	74.24		
1v77A	212	75.32	c.6.3.2	108402
2jgzB	260	78.72		
2bbeA	108	78.97		
2h6bA	250	79.53		
1o0pA	104	81.16	d.58.7.1	86535
1mmuA	347	82.93	b.30.5.4	79303
1tedA	393	84.19	c.95.1.2	106807
2d9rA	104	86.26	b.129.2.1	131350
2cchB	260	86.35	a.74.1.1,a.74.1.1	130237,130238
2p19A	149	88.98