# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hxvA	113	24.86	d.26.1.1	71089
2je6B	250	25.50		
1vgjA	184	27.55		
2c2jA	211	28.36		
1cn4C	166	31.07	a.26.1.2	16847
1uwdA	103	34.21	d.52.8.2	113447
2r6r1	338	34.75		
2nn6B	249	40.92		
1qo8A	566	52.51	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
2hq4A	161	56.42		
2d4gA	171	56.55		
2glwA	92	56.83		
3c10A	423	57.55		
2ddzA	190	71.20		
2p58C	116	71.90		
1tfeA	145	73.19	d.43.1.1	38680
1mc0A	368	74.52	d.110.2.1,d.110.2.1	78937,78938
1v77A	212	74.59	c.6.3.2	108402
2z90A	161	77.90		
2bbeA	108	79.68		
1rq2A	382	81.24	c.32.1.1,d.79.2.1	105048,105049
1oj7A	408	83.04	e.22.1.2	103971
1eerA	166	84.29	a.26.1.2	16846
2f2lA	167	85.65	d.118.1.1	132843