# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	4.742		
2d51A	406	6.492		
1xesA	413	7.421		
1dkxA	219	8.825	a.8.4.1,b.130.1.1	90339,90340
3d2fA	675	9.019		
1i88A	389	10.06	c.95.1.2,c.95.1.2	66070,66071
1rec	201	10.30		
1hnjA	317	10.32	c.95.1.2,c.95.1.2	35969,35970
2hwvA	121	10.50		
1u00A	227	10.54	a.8.4.1,b.130.1.1	112900,112901
1omrA	201	11.53	a.39.1.5	93349
1hzpA	335	11.85	c.95.1.2,c.95.1.2	61455,61456
3c5iA	369	12.36		
1dkzA	219	15.47	a.8.4.1,b.130.1.1	90345,90346
1mzjA	339	16.83	c.95.1.2,c.95.1.2	79700,79701
1hn9A	317	19.92	c.95.1.2,c.95.1.2	35977,35978
1o60A	292	20.41	c.1.10.4	92532
1d9eA	284	22.02	c.1.10.4	29195
2hpsA	186	23.64		
1snlA	103	24.20	a.39.1.7	105820
1wduA	245	27.50	d.151.1.1	109286
2d4pA	141	28.28		
1bi5A	389	28.82	c.95.1.2,c.95.1.2	35985,35986
2d1vA	108	29.51		
2yvlA	248	30.11		
1aop	497	31.87		
2ehgA	149	32.53		
1tedA	393	32.89	c.95.1.2	106807
1zowA	313	33.45		
1epaA	164	37.22	b.60.1.1	27128
1opcA	110	42.57	a.4.6.1	16231
1x89A	178	43.47	b.60.1.1	121799
1i86A	389	44.00	c.95.1.2,c.95.1.2	66068,66069
2iruA	303	44.92		
2guiA	194	45.36	c.55.3.5	135737
1k8kB	394	45.67	c.55.1.1	68307
1e8cA	498	47.63	c.98.1.1,c.59.1.1,c.72.2.1	59377,59378,59379
1tr8A	102	48.25		
1hbnC	248	51.99	d.58.31.1	60902
1qqsA	174	52.20	b.60.1.1	27143
1qd1A	325	56.34	d.58.34.1,d.58.34.1	39493,39494
1x74A	360	56.48	c.123.1.1	121771
1ytaA	180	56.75	c.55.3.5	124002
2f9iB	285	57.91		
3cnwA	148	59.39		
1opc	110	61.68		
1aopA	497	63.24	d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1	39501,39502,41425,41426
1vkkA	154	66.34	d.109.1.2	108669
1c0aA	585	68.15	b.40.4.1,d.74.4.1,d.104.1.1	25246,39731,40767
1v47A	349	69.19	b.122.1.3,c.26.1.5	100292,100293
1vgjA	184	70.30		
1u0mA	382	72.55	c.95.1.2,c.95.1.2	107557,107558
1vlcA	366	74.04	c.77.1.1	108743
2ef0A	301	74.34		
2vjqA	428	75.22		
1e6yB	433	76.95	a.89.1.1,d.58.31.2	18535,39453
2pmuA	110	78.49		
1fx3A	169	79.31	d.33.1.1	38524
2qikA	285	79.46		
2i5tA	188	83.49		
1mykA	53	85.47	a.43.1.1	17425
2h3gX	268	85.78		
2ebdA	309	86.26		
1zwxA	301	87.04	d.151.1.3	125752
1ujnA	348	88.49	e.22.1.1	99460
1mroC	247	88.59	d.58.31.1	39437