# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zowA	313	8.979		
1g6oA	330	9.075	c.37.1.11	32430
2ebdA	309	10.36		
1hnjA	317	13.81	c.95.1.2,c.95.1.2	35969,35970
2pt7A	330	14.32		
1a3yA	149	23.83	b.60.1.1	27110
2glwA	92	25.85		
1v5dA	386	26.17	a.102.1.2	113537
2r6hA	290	28.72		
1m7vA	363	34.46	d.174.1.1	78748
1tedA	393	37.14	c.95.1.2	106807
1rzsA	61	38.05	a.35.1.2	105139
2q18X	293	44.22		
2oynA	146	46.71		
1k8tA	510	47.21	e.41.1.1	68316
1u6eA	335	53.58	c.95.1.2,c.95.1.2	119568,119569
2rilA	99	53.60		
2hoqA	241	54.37		
2gh1A	301	55.06	c.66.1.49	135170
1mzjA	339	59.27	c.95.1.2,c.95.1.2	79700,79701
1ku3A	73	67.86	a.4.13.2	73000
1ezjA	115	71.45	h.1.14.1	45638
2g7oA	70	77.31	a.241.1.1	134736
2vbuA	136	78.80		
1i88A	389	81.68	c.95.1.2,c.95.1.2	66070,66071
1vqoA	240	85.03	b.34.5.3,b.40.4.5	120361,120362