# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g6oA	330	13.46	c.37.1.11	32430
1zowA	313	17.24		
2pt7A	330	20.30		
1v5dA	386	23.23	a.102.1.2	113537
1hnjA	317	23.34	c.95.1.2,c.95.1.2	35969,35970
2glwA	92	28.53		
2r6hA	290	29.27		
2ebdA	309	36.81		
2q18X	293	36.96		
1rzsA	61	42.97	a.35.1.2	105139
1m7vA	363	45.50	d.174.1.1	78748
2hoqA	241	52.29		
1dwkA	156	56.82	a.35.1.4,d.72.1.1	17075,39606
2oynA	146	57.14		
2rilA	99	60.40		
2g7oA	70	66.21	a.241.1.1	134736
2gh1A	301	71.01	c.66.1.49	135170
1k8tA	510	74.53	e.41.1.1	68316
3bs6A	280	74.74		
2ps1A	226	78.12		
3cygA	222	78.62		
2igiA	180	79.16		
1pswA	348	80.92	c.87.1.7	88287
1mzjA	339	86.75	c.95.1.2,c.95.1.2	79700,79701
1a3yA	149	87.10	b.60.1.1	27110
1vqoA	240	87.45	b.34.5.3,b.40.4.5	120361,120362
1k4iA	233	88.43	d.115.1.2	72056
1tedA	393	89.30	c.95.1.2	106807