# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zowA	313	11.38		
2q18X	293	14.16		
2glwA	92	14.16		
2r6hA	290	15.41		
1m7vA	363	16.48	d.174.1.1	78748
1g6oA	330	19.54	c.37.1.11	32430
2ebdA	309	20.87		
1rzsA	61	23.70	a.35.1.2	105139
1u6eA	335	24.63	c.95.1.2,c.95.1.2	119568,119569
1hnjA	317	27.76	c.95.1.2,c.95.1.2	35969,35970
2oynA	146	31.34		
1ku3A	73	33.31	a.4.13.2	73000
1a3yA	149	33.64	b.60.1.1	27110
1mzjA	339	34.13	c.95.1.2,c.95.1.2	79700,79701
2hoqA	241	36.90		
3bs2A	148	38.51		
2uxqA	402	41.42		
1k4iA	233	41.88	d.115.1.2	72056
3bkwA	243	42.84		
1fdr	248	47.04		
2pt7A	330	50.74		
2pifA	276	53.16		
1a8pA	258	54.47	b.43.4.2,c.25.1.1	25654,31544
2gh1A	301	58.85	c.66.1.49	135170
1fm0D	81	61.64	d.15.3.1	37642
2qdxA	257	66.54		
1fdrA	248	67.89	b.43.4.2,c.25.1.1	25653,31543
2fa1A	160	73.84	d.190.1.2	133182
2nsaA	170	75.34		
2ps1A	226	76.80		
2ebbA	101	77.64		
1owfA	99	79.63	a.55.1.1	87487
2cpgA	45	79.82	a.43.1.3	17455
1aj2A	282	79.98	c.1.21.1	29665
2ns0A	85	81.63		
1kaeA	434	81.73	c.82.1.2	72247
2hzqA	174	81.81		
1p71A	94	81.92	a.55.1.1	87840
2nvaA	372	82.16		
1to3A	304	82.89	c.1.10.1	107161
1tedA	393	86.08	c.95.1.2	106807
2rhmA	193	86.12		
2bayA	61	86.25	g.44.1.2	128251
2rilA	99	88.53		
2eixA	243	89.23