# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1v5dA	386	12.11	a.102.1.2	113537
1zowA	313	13.44		
2ebdA	309	18.05		
1a3yA	149	18.21	b.60.1.1	27110
2r6hA	290	18.69		
2q18X	293	20.45		
2glwA	92	20.69		
1m7vA	363	23.49	d.174.1.1	78748
1g6oA	330	27.53	c.37.1.11	32430
1ezjA	115	29.16	h.1.14.1	45638
2hoqA	241	30.83		
1hnjA	317	32.11	c.95.1.2,c.95.1.2	35969,35970
1v4vA	376	43.13	c.87.1.3	100313
1ku3A	73	50.92	a.4.13.2	73000
1v72A	356	51.50	c.67.1.1	119860
1aj2A	282	57.83	c.1.21.1	29665
2f60K	64	59.44		
2g9wA	138	59.73		
1rzsA	61	63.78	a.35.1.2	105139
2ps1A	226	63.87		
2g7oA	70	65.76	a.241.1.1	134736
2j2jA	197	67.47		
1iuqA	367	67.63	c.112.1.1	90703
2oynA	146	68.14		
2pt7A	330	68.39		
1k4iA	233	73.92	d.115.1.2	72056
1mx0A	472	75.58	a.156.1.3,d.14.1.3,d.122.1.2	79618,79619,79620
1sd4A	126	76.69	a.4.5.39	105428
1q2hA	69	78.00	a.34.4.1	104498
1dp7P	76	80.80	a.4.5.20	16159
1tedA	393	81.03	c.95.1.2	106807
2gd9A	189	83.20		
1k8tA	510	86.53	e.41.1.1	68316
1mzjA	339	86.57	c.95.1.2,c.95.1.2	79700,79701