# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2drhA 361 0.9510 1mx0A 472 3.138 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2hk0A 309 4.752 1cjaA 342 6.383 d.144.1.3 41708 2rhmA 193 6.438 1v4vA 376 7.610 c.87.1.3 100313 2ap1A 327 7.803 c.55.1.10,c.55.1.10 127108,127109 2z8pA 241 8.161 1sxjA 511 9.327 a.80.1.1,c.37.1.20 106081,106082 1b65A 375 9.97 d.154.1.1 42020 1aop 497 11.05 1xesA 413 11.11 1u0mA 382 11.41 c.95.1.2,c.95.1.2 107557,107558 2eixA 243 11.56 2nn6B 249 11.67 1udcA 338 12.85 c.2.1.2 29785 2basA 431 14.12 c.1.33.1,d.110.6.2 128244,128245 1rhyA 202 14.78 d.14.1.9,d.14.1.9 97491,97492 1a3yA 149 17.19 b.60.1.1 27110 1y791 680 18.02 1ur1A 378 20.58 c.1.8.3 99804 1eg7A 557 21.39 c.37.1.10 32241 1cnzA 363 21.49 c.77.1.1 35061 1i0dA 332 21.91 c.1.9.3 61487 1odzA 386 23.32 c.1.8.3 86889 2qo3A 915 24.04 1vkhA 273 24.16 c.69.1.32 108662 2nvaA 372 24.37 3crrA 323 24.62 1g6oA 330 24.92 c.37.1.11 32430 1wl4A 397 24.92 2e9xA 149 25.82 2d1cA 496 25.84 1byiA 224 28.78 c.37.1.10 32199 1hwxA 501 29.61 c.2.1.7,c.58.1.1 30250,33898 2bdeA 470 30.22 c.108.1.23 128335 2gk4A 232 30.37 1v97A 1332 30.67 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1hxxA 340 33.57 f.4.3.1 61385 1x8qA 184 34.70 b.60.1.1 114966 2gd9A 189 34.92 2hfsA 332 36.18 1yozA 116 36.42 a.253.1.1 123796 1rxwA 336 37.71 a.60.7.1,c.120.1.2 98059,98060 1cs0A 1073 38.13 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1barA 140 39.48 b.42.1.1 25504 1musA 477 39.88 c.55.3.4 79494 4bcl 366 41.90 1hbnA 549 41.95 a.89.1.1,d.58.31.2 60898,60899 1w36B 1180 42.89 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2imjA 166 43.00 1qfjA 232 43.60 b.43.4.2,c.25.1.1 25655,31545 1yaaA 412 45.47 c.67.1.1 34280 2glwA 92 46.17 2oynA 146 46.90 2igiA 180 47.00 1apyB 141 47.33 2r6hA 290 50.96 2r11A 306 51.67 2dkaA 544 52.11 1yqyA 523 52.41 d.92.1.14,d.166.1.1 123903,123904 1jvbA 347 54.15 b.35.1.2,c.2.1.1 77181,77182 1t90A 486 57.62 1wrjA 156 58.04 1w0dA 337 59.22 c.77.1.1 114060 1rg9A 383 60.03 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1tt7A 330 60.40 b.35.1.2,c.2.1.1 112623,112624 1l1qA 186 61.19 c.61.1.1 77653 1txnA 328 64.44 d.248.1.1 112779 1dzkA 157 65.47 b.60.1.1 27096 1vchA 175 66.03 c.61.1.1 119980 1lh0A 213 66.28 c.61.1.1 73896 1xmxA 385 66.80 c.52.1.26 115568 2hwvA 121 67.04 1to3A 304 67.21 c.1.10.1 107161 1gxjA 186 67.25 d.215.1.1 70707 1juhA 350 68.50 b.82.1.5 71884 2e01A 457 68.84 2dfuA 264 69.60 1z9nA 177 70.28 2e87A 357 71.59 2owbA 335 71.76 1pjrA 724 72.12 c.37.1.19,c.37.1.19 32391,32392 2giyA 191 72.20 b.1.1.1 135254 2r6iA 284 73.30 1ml8A 134 75.62 d.227.1.2 85013 1ezjA 115 75.81 h.1.14.1 45638 1nbaA 264 76.06 c.33.1.3 31753 2hs8A 402 76.80 1ex0A 731 77.13 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2pg9A 337 77.29 1ta8A 332 78.02 d.142.2.2 112375 1zzmA 259 80.70 c.1.9.12 125911 2j2jA 197 80.71 1rocA 155 83.45 b.1.22.1 97673 2apxA 112 84.15 2h6bA 250 85.63 1jysA 242 85.68 c.56.2.1 77216 2pnlA 203 89.90