# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hnjA	317	12.44	c.95.1.2,c.95.1.2	35969,35970
1zowA	313	17.40		
2glwA	92	18.73		
1v5dA	386	21.66	a.102.1.2	113537
1g6oA	330	28.53	c.37.1.11	32430
1rzsA	61	36.33	a.35.1.2	105139
2ebdA	309	37.10		
2q18X	293	39.98		
2r6hA	290	40.12		
2oynA	146	40.43		
2pt7A	330	41.27		
1ezjA	115	50.78	h.1.14.1	45638
2hoqA	241	55.63		
2vbuA	136	57.00		
2pifA	276	57.39		
1m7vA	363	59.25	d.174.1.1	78748
1aj2A	282	60.76	c.1.21.1	29665
1a3yA	149	64.54	b.60.1.1	27110
2g7oA	70	71.06	a.241.1.1	134736
2hzfA	114	84.22		
3bkwA	243	85.13