# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2glwA	92	13.69		
2je6B	250	18.17		
1a3yA	149	21.17	b.60.1.1	27110
1ezjA	115	23.43	h.1.14.1	45638
2hzfA	114	25.67		
2nw2B	243	37.91		
3byiA	214	39.20		
2nvrA	423	42.59		
2d4gA	171	43.04		
2pqpA	421	45.24		
1scfA	273	45.65	a.26.1.2	16873
2gd9A	189	48.27		
1v5dA	386	53.65	a.102.1.2	113537
1pq1A	196	54.97	f.1.4.1	94986
1kte	105	55.22		
2hwvA	121	58.75		
2qcvA	332	61.76		
2q18X	293	62.20		
1vgjA	184	68.62		
2uwjG	115	72.60		
2rp5A	136	75.04		
1epaA	164	76.27	b.60.1.1	27128
1z54A	132	77.73	d.38.1.1	124450
1gm6A	175	79.25	b.60.1.1	70272
1a53A	247	79.43	c.1.2.4	28564
1u55A	188	81.10	d.278.1.1	107677
1nkd	65	82.35		
1nkdA	65	82.35	a.30.1.1	16974
2c8mA	262	84.01		
1jsdB	176	85.22	h.3.1.1	63259
2eixA	243	85.25		
3c10A	423	86.83		
2cvjA	180	89.07		
1rzsA	61	89.80	a.35.1.2	105139