# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b77A	193	0.3125		
1u00A	227	4.451	a.8.4.1,b.130.1.1	112900,112901
1dkzA	219	7.280	a.8.4.1,b.130.1.1	90345,90346
2be3A	226	11.16	d.218.1.8	128349
1tedA	393	12.94	c.95.1.2	106807
2hsiA	282	21.21		
1epaA	164	21.75	b.60.1.1	27128
2imlA	199	21.96		
1wnaA	131	23.36	d.319.1.1	121091
1u0mA	382	24.78	c.95.1.2,c.95.1.2	107557,107558
1xesA	413	29.12		
1o60A	292	29.27	c.1.10.4	92532
2d51A	406	31.38		
1mgtA	174	31.45	a.4.2.1,c.55.7.1	16078,33753
1x89A	178	32.71	b.60.1.1	121799
2db9A	149	33.03		
2hwvA	121	35.30		
2uubK	129	38.07	c.55.4.1	139942
1k8kB	394	39.05	c.55.1.1	68307
1v47A	349	40.52	b.122.1.3,c.26.1.5	100292,100293
2igiA	180	41.43		
1i88A	389	42.32	c.95.1.2,c.95.1.2	66070,66071
1oj4A	283	44.04	d.14.1.5,d.58.26.5	93083,93084
1aop	497	44.85		
3bzyB	83	46.76		
1fjgK	129	46.83	c.55.4.1	33733
1zhxA	438	52.95	d.338.1.1	125112
1nd4A	264	53.78	d.144.1.6	91815
1ywmA	200	55.42		
1l8rA	101	55.98	a.6.1.4	73700
1ulrA	88	56.96	d.58.10.1	113283
2h3gX	268	58.26		
1hbnC	248	59.12	d.58.31.1	60902
3d2fA	675	59.17		
2op6A	152	65.40		
1lf7A	182	66.01	b.60.1.1	73878
1vlcA	366	66.48	c.77.1.1	108743
2fi9A	128	68.47	c.103.1.1	133513
2bzeA	153	69.11		
1xfjA	261	70.27	d.194.1.2	109585
1zowA	313	70.37		
1x31C	206	70.81		
2shpA	525	71.80	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
2p9jA	162	73.89		
2d9rA	104	74.60	b.129.2.1	131350
3cnwA	148	75.77		
2flsA	132	77.13		
1qnaA	200	77.79	d.129.1.1,d.129.1.1	41226,41227
2odaA	196	78.27		
1gm6A	175	80.70	b.60.1.1	70272
1t3qC	288	81.38	d.87.2.1,d.145.1.3	106371,106372
2anxA	146	83.67		
2qikA	285	85.31		
2f9iB	285	85.96		
2glwA	92	86.47		
1yloA	348	87.28	b.49.3.1,c.56.5.4	123659,123660
2e6fA	314	87.55		
1xmtA	103	88.49	d.108.1.1	115561
1uekA	275	89.31	d.14.1.5,d.58.26.5	88483,88484