(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0482 PaT3, Pseudomonas aeruginosa, 120 residues
                   10                20        30        40        50  
                   |                 |         |         |         |  
   1 ...M..FEPGHLHLV.SLP...GLD.Q.QD..INIHIRYEVRQNAESGAYVHFDMDGEIDGKPFS
   2 ...M..FEPGHLHLV.SLP...GLD.Q.QD..INIHIRYEVRHNAESGAYVHFDMDGEIDGKPFS
   3 ...M..FEPGHLHLV.SLP...GLD.Q.QD..INIHIRYEVRQNAESGAYVHFDMDGEIDGKPFS
   4 ...M..FEPGHLHLV.SLP...GLD.Q.QD..INIHIRYEVRQNAESGAYVHFDMDGEIDGKPFS
   5 ...M..YEPGHLHLT.HV-...ALQ.P.SDisYDIHLRYNVEEDPKQGTSMHFTMQGEINGKPFE
   6 ...M..FEPGHLHRS.NPP...GLG.G.QPa.YSIDFYYEVRKDSPEGPMLHGRLVGEIDGKAFE
   7 ...M..YEPGHLHIT.HV-...ALQ.P.SEvsYDIHLRYEVNEDPKEGTSMHFTMQGQINDKPFE
   8 ...M..FIPGHLHLA.SAS...EVD.R.QA..FDIHLRYRVLEAEARPVAVHFDMEGRIDGQPFS
   9 ...M..FIPGHLHLA.SAS...EVD.R.QA..FDIHLRYRVLEAEARPVAVHFDMEGRIDGQPFS
  10 ...MaqYHPGHVH-I.ERT...ALN.N.ADhsYDLNIEYEAVSDPREGRGIQFHMHGSIEGKPVE
  11 ...MaqYQPGHVH-I.ERS...ALN.N.ADhsYDLNIEYEAVSDPKEGRGIQFHMHGSIEGKTVE
  12 ...M..FTPGHAHREqKVD...KLN.R.QA..FICDVYYEVREDAREGAMLHMRMEGEIDGRPFA
  13 ...MaqYQPGHVH-I.ERT...ALN.A.NDhsYDLNIEYEATQDPREGRGIQFRLHGSIEGKPVD
  14 ...M..FEPGHLNRK.KQP...GIP.GvPD..FDIDVYYDVRHDPKEGVLLHFRMTGQVNGRSFT
  15 ...MaqYQPGHVH-I.ERT...ALN.T.NDhsYDLNIEYEAATDPKEGRGIQFRMHGHIEGKTVD
  16 ...M..FVPGHLHLA.SAS...EVD.R.QA..FDIHLRYRILEADARPVAVHFDMEGRIDGQPFR
  17 eiaMaqYHSGHVH-I.ERT...ALN.N.ADhsYDLNIEYEAVADPKEGRGIQFHMHGSIEGKPVE
  18 ...MaqFEPGHLH-I.ERH...ALT.D.DDvnYNVHLDYEVFTDPQKGKGIQFTLHGSMQGKEVN
  19 ...M..FTPGHLHRD.NLDrpeGLRlA.PP..FSVDFYYEIRQDPVQGPMLHMRLVGEVSGRHFD
  20 ma.M..FEPGHLH-I.ERH...ALN.K.DDfsYNLCIDYEVAHDPKEGKGMLFTLHGTIEDKSLK
  21 ...M..FGPGHVEIS.RLP...TEA.R.PG..YHLTLDYHVEGAEPRPEWACFHLRVEAPQVHID


            60         70         80         90       100       110    
            |          |          |          |         |         |    
   1 DSFELPRDTAFN.FASDATRVAQKHGLH.P.KFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLE
   2 DSFELPRDTAFN.FASDATRVAQKHGLH.P.KFGAITRVHKEYDAMFEDIRDKLHAHPGEPVDLE
   3 DSFELPRDTAFN.FASDATRVAQKHGLH.P.KFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLE
   4 DSFELPRDTAFN.FASDATRVAQKHGLH.P.KFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLE
   5 EQFQLPRDLAFN.FAHDASRIAIRHGLP.N.SAALPIAQHKDYDRMFADIRDKLHAKSGDPVKPE
   6 EVFEMHRDTAFN.FASVISRLVAKHGLH.P.NNSPIMRAHKEYDAIFEDIRAKLHAKPGEAVNLD
   7 EQFQLTRDLAFN.FAHDASRIAIRHGLP.N.SASLPIAQHKDYDRIFADIRDKLHAKPGDPVKPE
   8 ESFELPRDAAVH.FASRASRLARRHGLR.L.RQGPIVRQRREYDAMFDDLRRRLKLKSGEAIDLD
   9 ESFELPRDAAVH.FASRASRLARRHGLR.L.RQGPIVRQRREYDAMFDDLRRRLKLKSGEAIDLD
  10 EKFFLPKDQVLPsFLMLLTRKAQSYLAP.PkKFETLSSPHKLYDYMFADIREKLDVKSGDPIKPE
  11 EKFFLAKDQALPsFLMLLTRKAQSYLAP.PkKFETLSSPHKLYDHMFADIREKLEVKSGDPIKPE
  12 EECELHRDMAFD.FLNALTRIAVRNGLH.P.RFGPVLREHGEYDAMFRDIRDKLGLRPGDPVDLG
  13 EKFYLPKDQVLPsFLMVLSRKAQSHLPPhK.KFETLGSPHKIYDQMFEDIRAKLDVKSGDSIKPE
  14 DEFEMHRDTAFN.FASRIAKAAVKQGLP.V.NASPIMRSHSEYDAMFADIRRKLEIRTGEPVNFD
  15 EKFFLAKDQVLPsFLMQLSRKAQSYLPP.PkKFENLGSPHKLYDYMFEDIRTKLDVKSGDPIKPE
  16 DSFELPRDAAVH.FASRASRVARRHGLR.L.RQGPIVRQRREYDAMFDDLRRRLKLKAGEAIDLD
  17 EKFFLAKDQVLPsFLMLLTRKAQSYLAP.PkKFETLSSPHKLYDHMFADIREKLDVKSGDPIKPE
  18 EPFFLPKEEAYN.FARNVTQIAEKYGIP.K.SHSQIGSVHKHYDLMFEDIRMKLNMKSGDPVNPE
  19 EEFELHRDVAFN.FASVASRVAARHGLP.P.NASPVMRGHDEYDKVFADIRSKLHARPGEPVNLD
  20 EQFFLAKDLAFD.FARHATRLAQQHGLP.K.SAS-IASMHKYYDEMFEDVRKQLDVKPGDPVKPE
  21 EQFRMHRDVAYN.FLQRIRRCLRDHGVQ.V.RQDILFGFHALYDPLYADLRQQLHLQPGEAVDLD


          120   
           |   
   1 RIIRH.E...
   2 RIIRH.E...
   3 RIIRH.E...
   4 RIIRHeG...
   5 HLE--.-...
   6 HVERD.Gl..
   7 HLE--.-...
   8 RYLRG.Eaga
   9 RYLRG.Eaga
  10 HLE--.-...
  11 HLE--.-...
  12 HLPNA.-...
  13 HLE--.-...
  14 NLEKD.Gf..
  15 HLE--.-...
  16 RHLLG.Aaga
  17 HLE--.-...
  18 HFE--.-...
  19 HVL--.-...
  20 HLA--.-...
  21 RFLRE.G...