# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u6eA	335	10.42	c.95.1.2,c.95.1.2	119568,119569
2glwA	92	35.17		
1hnjA	317	37.71	c.95.1.2,c.95.1.2	35969,35970
1rzsA	61	45.63	a.35.1.2	105139
1jmtA	104	51.71	d.58.7.3	63180
2q18X	293	52.78		
1ku3A	73	54.02	a.4.13.2	73000
1ezjA	115	58.77	h.1.14.1	45638
1oroA	213	60.42	c.61.1.1	34093
3grsA	478	70.59	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
1k30A	368	79.33	c.112.1.1	68067
1j3gA	187	83.32	d.118.1.1	77075
1lldA	319	86.18	c.2.1.5,d.162.1.1	30177,42144
1t2dA	322	87.66	c.2.1.5,d.162.1.1	99084,99085