# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u6eA	335	16.14	c.95.1.2,c.95.1.2	119568,119569
2glwA	92	27.38		
2q18X	293	28.11		
1hnjA	317	32.95	c.95.1.2,c.95.1.2	35969,35970
1rzsA	61	38.79	a.35.1.2	105139
1oroA	213	46.35	c.61.1.1	34093
3grsA	478	53.78	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
2g7oA	70	64.11	a.241.1.1	134736
2hzqA	174	65.58		
1ezjA	115	68.31	h.1.14.1	45638
2j7qA	232	74.33		
2yvlA	248	74.37		
1yioA	208	76.12	a.4.6.2,c.23.1.1	123326,123327
1jmtA	104	78.03	d.58.7.3	63180
1q6hA	224	82.27	d.26.1.1	95975
1dwkA	156	82.82	a.35.1.4,d.72.1.1	17075,39606