# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u6eA	335	5.422	c.95.1.2,c.95.1.2	119568,119569
1wr2A	238	10.21		
2glwA	92	12.08		
1ku3A	73	16.22	a.4.13.2	73000
1i4uA	181	17.46	b.60.1.1	61732
2q18X	293	20.39		
1hnjA	317	21.22	c.95.1.2,c.95.1.2	35969,35970
2hufA	393	25.36		
1rzsA	61	26.53	a.35.1.2	105139
2hzqA	174	31.87		
2dr1A	386	34.02		
2cvjA	180	36.88		
1k4iA	233	43.84	d.115.1.2	72056
1lldA	319	47.50	c.2.1.5,d.162.1.1	30177,42144
1yioA	208	48.14	a.4.6.2,c.23.1.1	123326,123327
1oroA	213	48.42	c.61.1.1	34093
2pifA	276	49.26		
1t2dA	322	50.48	c.2.1.5,d.162.1.1	99084,99085
1zowA	313	54.86		
1sq2N	113	59.54	b.1.1.1	105881
1edtA	271	67.12	c.1.8.5	28993
1wruA	379	76.26		
2ebbA	101	76.42		
2fa1A	160	77.15	d.190.1.2	133182
1kqqA	139	78.38	a.4.3.1	72885
3bs2A	148	79.27		
2oynA	146	81.06		
2b4vA	468	82.08	a.160.1.4,d.218.1.10	127864,127865
2cpgA	45	82.09	a.43.1.3	17455
1p71A	94	82.91	a.55.1.1	87840
1ad1A	266	86.72	c.1.21.1	29668
1xmpA	170	88.51	c.23.8.1	115521