# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u6eA	335	10.09	c.95.1.2,c.95.1.2	119568,119569
2glwA	92	18.97		
1ezjA	115	27.04	h.1.14.1	45638
1vflA	356	27.95	c.1.9.1	120041
2q18X	293	30.45		
3grsA	478	30.48	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
1li5A	461	31.74	a.27.1.1,c.26.1.1	73912,73913
1zuwA	272	34.44		
1ku3A	73	36.57	a.4.13.2	73000
1jmtA	104	36.92	d.58.7.3	63180
2b4vA	468	37.11	a.160.1.4,d.218.1.10	127864,127865
1iuqA	367	41.75	c.112.1.1	90703
1k30A	368	55.51	c.112.1.1	68067
1dp7P	76	59.35	a.4.5.20	16159
2oynA	146	60.14		
1u7pA	164	70.52	c.108.1.17	113095
2f60K	64	73.29		
2gpcA	194	73.72		
2g7oA	70	75.60	a.241.1.1	134736
1oh0A	131	79.20	d.17.4.3	87004
2hueC	84	79.47	a.22.1.1	136776
1rzsA	61	81.04	a.35.1.2	105139
1wvfA	520	87.69	d.58.32.1,d.145.1.1	121337,121338
2vbuA	136	89.06