# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2glwA	92	17.49		
2nn6B	249	17.89		
2b4vA	468	22.77	a.160.1.4,d.218.1.10	127864,127865
1jmtA	104	34.72	d.58.7.3	63180
3grsA	478	42.37	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
2yvlA	248	42.70		
1jlnA	297	44.78	c.45.1.2	63172
1u6eA	335	46.62	c.95.1.2,c.95.1.2	119568,119569
2rghA	571	51.29		
1w9pA	433	56.34	c.1.8.5,d.26.3.1	114412,114413
2j7qA	232	58.63		
1kteA	105	59.23	c.47.1.1	32771
2apjA	260	62.27	c.23.10.7	127128
1elqA	390	67.06	c.67.1.3	34436
2cvjA	180	72.89		
1owqA	361	76.53	c.1.8.5,d.26.3.1	104041,104042
2uwjG	115	76.97		
1nkd	65	77.64		
1nkdA	65	81.49	a.30.1.1	16974
1y2kA	349	83.94	a.211.1.2	122571
2nl9A	157	84.90		
2q18X	293	85.63		
2eavA	165	86.85		
2ooiA	162	89.72