# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u6eA	335	16.44	c.95.1.2,c.95.1.2	119568,119569
2q18X	293	29.36		
1ezjA	115	37.80	h.1.14.1	45638
2glwA	92	38.57		
1hnjA	317	39.40	c.95.1.2,c.95.1.2	35969,35970
2j7qA	232	48.20		
1ku3A	73	49.64	a.4.13.2	73000
2hzqA	174	56.90		
1vflA	356	57.16	c.1.9.1	120041
1elqA	390	59.03	c.67.1.3	34436
2oynA	146	61.79		
1yioA	208	62.18	a.4.6.2,c.23.1.1	123326,123327
1jmtA	104	73.34	d.58.7.3	63180
1rzsA	61	73.87	a.35.1.2	105139
3grsA	478	78.48	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
1ad1A	266	82.40	c.1.21.1	29668
1zowA	313	83.59		
3bwgA	239	83.93		
1j3gA	187	86.20	d.118.1.1	77075
2b4vA	468	89.19	a.160.1.4,d.218.1.10	127864,127865