# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nn6B 249 1.333 2b4vA 468 2.190 a.160.1.4,d.218.1.10 127864,127865 1sy3A 184 2.317 b.60.1.1 106110 1uypA 432 3.612 b.29.1.19,b.67.2.3 100176,100177 1kblA 873 3.780 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1j3gA 187 4.149 d.118.1.1 77075 1ox0A 430 5.045 c.95.1.1,c.95.1.1 87495,87496 1x8qA 184 5.172 b.60.1.1 114966 1xesA 413 5.294 2yweA 600 6.421 1b65A 375 7.130 d.154.1.1 42020 2z8pA 241 8.047 1tqnA 486 8.702 a.104.1.1 107238 2rghA 571 10.68 1opcA 110 11.53 a.4.6.1 16231 2hhpA 530 11.78 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 2bryA 497 12.00 1y791 680 13.97 1s48A 609 13.98 e.8.1.4 98475 1mu5A 471 14.10 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1kewA 361 14.25 c.2.1.2 68544 1v7wA 807 14.94 a.102.1.4,b.30.5.3 108411,108412 1e54A 332 15.11 f.4.3.1 59258 2drhA 361 15.18 1cjaA 342 15.65 d.144.1.3 41708 1jv1A 505 15.81 c.68.1.5 71892 1erxA 184 17.12 b.60.1.1 27164 1wl4A 397 18.49 1sxjA 511 20.38 a.80.1.1,c.37.1.20 106081,106082 1aopA 497 20.80 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2cxaA 256 21.06 d.108.1.6 130993 2apxA 112 22.74 2ganA 190 23.10 d.108.1.1 134889 2pg9A 337 23.14 2gk4A 232 25.18 1xmxA 385 25.46 c.52.1.26 115568 2e9xA 149 25.55 2qo3A 915 25.74 1jvbA 347 25.83 b.35.1.2,c.2.1.1 77181,77182 2bdeA 470 25.86 c.108.1.23 128335 1v97A 1332 26.47 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 2zogA 479 26.80 1rhyA 202 27.03 d.14.1.9,d.14.1.9 97491,97492 2imjA 166 27.32 2v3uA 265 27.33 2fi1A 190 27.86 c.108.1.3 133508 1u0mA 382 27.92 c.95.1.2,c.95.1.2 107557,107558 1eg7A 557 28.18 c.37.1.10 32241 3b7nA 320 28.79 2z8gA 549 28.84 1pjr 724 29.96 2c0rA 362 30.19 c.67.1.4 129604 2fbwB 252 30.29 3c3pA 210 31.38 2ap1A 327 32.12 c.55.1.10,c.55.1.10 127108,127109 1eexB 224 33.33 c.51.3.1 33213 1xngA 268 35.42 c.26.2.1 122186 1yqyA 523 35.80 d.92.1.14,d.166.1.1 123903,123904 1oltA 457 37.25 c.1.28.2 93334 1yozA 116 37.91 a.253.1.1 123796 3bwgA 239 38.08 1dekA 241 38.19 c.37.1.1 31842 1hwxA 501 39.04 c.2.1.7,c.58.1.1 30250,33898 1nbwB 117 43.92 c.51.3.2 80396 3b5mA 205 44.62 2c0hA 353 47.10 c.1.8.3 129594 1v4vA 376 47.69 c.87.1.3 100313 1d8cA 723 47.76 c.1.13.1 29325 2f2hA 773 48.90 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1gxjA 186 49.00 d.215.1.1 70707 1ile 821 49.38 1t90A 486 50.52 3cb6A 444 50.80 1ku3A 73 52.15 a.4.13.2 73000 1aop 497 53.07 1mqoA 227 53.35 d.157.1.1 103846 1a5zA 319 53.69 c.2.1.5,d.162.1.1 30181,42148 2gd9A 189 53.93 2hfsA 332 55.70 1jmtA 104 56.89 d.58.7.3 63180 2glwA 92 59.17 2vbaA 406 60.01 1cs0A 1073 61.35 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1xadA 345 61.40 c.77.1.1 35055 1p2xA 159 62.28 a.40.1.1 104062 2dh2A 424 63.59 1dzkA 157 63.65 b.60.1.1 27096 180lA 164 64.94 d.2.1.3 36867 1txnA 328 66.41 d.248.1.1 112779 1yvkA 163 66.63 d.108.1.1 124101 1qnjA 240 68.78 b.47.1.2 26238 1zy9A 564 70.90 b.30.5.11,c.1.8.13 125813,125814 1ml8A 134 71.34 d.227.1.2 85013 2hzqA 174 72.05 1hjsA 332 72.05 c.1.8.3 83492 2e9xB 185 73.40 4bcl 366 74.35 1j99A 293 75.98 c.37.1.5 71618 1cnzA 363 77.64 c.77.1.1 35061 1t8qA 336 78.33 c.1.18.3 106669 1ezjA 115 79.71 h.1.14.1 45638 1uebA 184 80.82 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2rhmA 193 80.95 1p4wA 99 81.23 a.4.6.2 87783 1m65A 245 84.37 c.6.3.1 84847 1nif 340 85.36 2yyyA 343 85.42 1zybA 232 86.12 a.4.5.4,b.82.3.2 125815,125816 2q6fA 309 86.47 1nbaA 264 87.48 c.33.1.3 31753