# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u6eA	335	10.97	c.95.1.2,c.95.1.2	119568,119569
2glwA	92	17.71		
1rzsA	61	26.91	a.35.1.2	105139
2b4vA	468	38.29	a.160.1.4,d.218.1.10	127864,127865
2q18X	293	45.54		
1jmtA	104	51.22	d.58.7.3	63180
1wruA	379	51.50		
2vbuA	136	53.32		
1ezjA	115	61.11	h.1.14.1	45638
1j3gA	187	61.41	d.118.1.1	77075
1iuqA	367	65.44	c.112.1.1	90703
1k30A	368	66.42	c.112.1.1	68067
2pifA	276	67.32		
2g7oA	70	71.44	a.241.1.1	134736
1ku3A	73	73.13	a.4.13.2	73000
1lldA	319	74.29	c.2.1.5,d.162.1.1	30177,42144
2oynA	146	77.28		
1hnjA	317	80.87	c.95.1.2,c.95.1.2	35969,35970
1fa0A	537	86.56	d.58.16.1,a.160.1.1,d.218.1.3	39335,75837,75838
1w9pA	433	87.37	c.1.8.5,d.26.3.1	114412,114413
1vflA	356	87.66	c.1.9.1	120041
1vefA	395	88.64	c.67.1.4	120018