# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2glwA	92	5.273		
2b4vA	468	9.217	a.160.1.4,d.218.1.10	127864,127865
1vqoL	165	16.10	c.12.1.1	120373
2obaA	138	19.46		
2nn6B	249	20.08		
3grsA	478	22.18	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
2oynA	146	26.91		
2yvlA	248	28.00		
1th5A	74	41.33	d.52.8.1	119263
2osaA	202	41.47		
1ezjA	115	45.84	h.1.14.1	45638
1jmtA	104	47.07	d.58.7.3	63180
2vbuA	136	49.82		
2vgaA	207	50.55		
1yduA	170	50.70	b.162.1.1	123003
2uwjG	115	56.84		
2cvjA	180	57.90		
1j3gA	187	58.64	d.118.1.1	77075
1b43A	340	59.93	a.60.7.1,c.120.1.2	18092,33362
1jlnA	297	64.43	c.45.1.2	63172
2rghA	571	70.39		
2apxA	112	71.60		
1yioA	208	73.52	a.4.6.2,c.23.1.1	123326,123327
2zbwA	335	80.44		
1jqgA	433	83.45	c.56.5.1,d.58.3.1	71791,71792
1ri9A	102	84.58	b.34.2.1	97506