# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j3gA	187	8.574	d.118.1.1	77075
1w9pA	433	21.93	c.1.8.5,d.26.3.1	114412,114413
2nn6B	249	27.62		
2b4vA	468	30.40	a.160.1.4,d.218.1.10	127864,127865
2glwA	92	32.48		
1jlnA	297	32.74	c.45.1.2	63172
1ezjA	115	33.99	h.1.14.1	45638
1elqA	390	35.53	c.67.1.3	34436
1owqA	361	41.67	c.1.8.5,d.26.3.1	104041,104042
1hjxA	362	44.20	c.1.8.5,d.26.3.1	83512,83513
1gm6A	175	47.59	b.60.1.1	70272
1jsmB	176	57.02	h.3.1.1	63265
2cvjA	180	59.42		
2je6B	250	62.10		
1i4nA	251	68.07	c.1.2.4	71114
1rzsA	61	71.59	a.35.1.2	105139
1jmtA	104	74.32	d.58.7.3	63180
1kewA	361	77.17	c.2.1.2	68544
1kteA	105	78.88	c.47.1.1	32771
1hkkA	364	79.36	c.1.8.5,d.26.3.1	90634,90635
2hq4A	161	80.49		
1zndA	174	80.56	b.60.1.1	125380
1dzkA	157	81.69	b.60.1.1	27096