# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u00A	227	5.577	a.8.4.1,b.130.1.1	112900,112901
3b77A	193	7.548		
2bzeA	153	9.194		
1fx3A	169	14.40	d.33.1.1	38524
1nd4A	264	16.29	d.144.1.6	91815
2hsiA	282	20.15		
2hwvA	121	20.41		
2yvlA	248	21.50		
1epaA	164	22.46	b.60.1.1	27128
1o60A	292	26.67	c.1.10.4	92532
1fjgK	129	27.04	c.55.4.1	33733
2uubK	129	27.43	c.55.4.1	139942
3d2fA	675	28.07		
2d1vA	108	28.18		
3bp1A	290	28.88		
1dkzA	219	29.15	a.8.4.1,b.130.1.1	90345,90346
1wnaA	131	31.78	d.319.1.1	121091
2imlA	199	32.85		
2rbkA	261	33.64		
2d51A	406	34.88		
1zowA	313	37.31		
2hpsA	186	37.76		
1tedA	393	40.98	c.95.1.2	106807
1k8kB	394	42.27	c.55.1.1	68307
1srqA	341	46.27	e.55.1.1	105967
2db9A	149	48.66		
1uhkA	191	49.20	a.39.1.5	119681
1q48A	134	49.66	d.224.1.2	95783
1ymqA	261	49.94	c.108.1.10	123707
2igiA	180	52.00		
1oj4A	283	52.41	d.14.1.5,d.58.26.5	93083,93084
1zwxA	301	53.80	d.151.1.3	125752
1uekA	275	55.37	d.14.1.5,d.58.26.5	88483,88484
1ytaA	180	59.18	c.55.3.5	124002
1gm6A	175	59.37	b.60.1.1	70272
2g3aA	152	59.72	d.108.1.1	134557
1aopA	497	59.88	d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1	39501,39502,41425,41426
1l8rA	101	61.65	a.6.1.4	73700
1zboA	210	62.77	b.122.1.10	124859
2fmlA	273	63.88	a.4.5.68,d.113.1.6	133778,133779
2ddrA	306	64.88	d.151.1.3	131398
1hbnC	248	66.72	d.58.31.1	60902
1x89A	178	68.30	b.60.1.1	121799
1j6wA	175	70.20	d.185.1.2	62663
2d4pA	141	71.90		
2acyA	98	74.01	d.58.10.1	39298
1k4iA	233	74.94	d.115.1.2	72056
1pq4A	291	79.72	c.92.2.2	94995
3chvA	284	80.64		
2anxA	146	81.29		
8tlnE	316	81.69	d.92.1.2	59075
1qqsA	174	84.85	b.60.1.1	27143
1sbxA	106	85.41	a.6.1.4	105414
2pmuA	110	86.26		
2ao0A	324	87.83		
1u7pA	164	88.08	c.108.1.17	113095
2vqeK	129	89.52		
2f9iB	285	89.52