# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	3.41e-18		
2hkvA	149	1.85e-17		
2f22A	144	4.22e-16	a.213.1.2	132795
2p1aA	154	1.06e-14		
2ou6A	190	1.03e-12		
1rxqA	178	4.11e-10	a.213.1.1	105118
3cexA	172	1.82e-09		
2qnlA	162	2.03e-06		
2yqyA	169	1.36e-05		
2gykB	134	3.822	d.4.1.1	135857
2i7qA	402	4.866		
2q4xA	221	5.149	a.132.1.3	139880
1mpgA	282	5.730	a.96.1.3,d.129.1.2	18747,41296
1or0A	160	7.196	d.153.1.2	93445
2cfuA	658	7.971		
2vlqB	134	9.192		
1emvB	134	12.93	d.4.1.1	37135
1nw1A	429	16.38	d.144.1.8	86286
1o7kA	131	16.71	d.189.1.1	81144
1fr2B	134	18.88	d.4.1.1	83257
1ylhA	560	23.26		
1nu5A	370	24.04	c.1.11.2,d.54.1.1	92183,92184
1mucA	373	24.69	c.1.11.2,d.54.1.1	29236,38880
1zchA	255	25.45	d.90.1.1	124908
3bqyA	209	26.31		
3d1cA	369	28.42		
2nsfA	261	28.67		
1mwpA	96	30.95	d.170.2.1	42453
2r2iA	198	32.09		
2bx2L	517	33.79		
2dk8A	81	35.22		
2iqcA	210	35.98		
1k1fA	72	36.02	a.147.1.1	68007
2oqyA	391	36.66		
1huxA	270	38.11	c.55.1.5	61278
3b6hA	498	39.22		
2iagA	482	40.19		
1pyfA	312	41.06	c.1.7.1	95334
1tyhA	248	41.14	a.132.1.3	107458
1snlA	103	42.60	a.39.1.7	105820
1iu8A	206	49.78	c.56.4.1	71436
2a6pA	208	51.74		
1p1xA	260	52.12	c.1.10.1	104060
1ur3M	319	53.93	c.1.7.1	99806
2aieP	203	56.65		
7ceiB	206	58.88	d.4.1.1	37134
1cvrA	435	60.38	b.1.18.12,c.17.1.2	21949,31006
3c0bA	334	61.65		
1sv0A	85	62.58	a.60.1.1	106035
1zfjA	491	63.06	c.1.5.1,d.37.1.1,d.37.1.1	28638,38540,38541
2au7A	175	66.53		
1rybA	212	67.99	c.56.3.1	98098
1i5gA	144	69.94	c.47.1.10	61784
2a6tA	271	70.17	a.242.1.1,d.113.1.7	126309,126310
2g47A	990	70.63		
1h6vA	499	71.04	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2og9A	393	71.43		
2i09A	403	71.63	c.76.1.5,d.327.1.1	136946,136947
1a76	326	75.40		
2napA	723	75.68	b.52.2.2,c.81.1.1	26926,35334
1ituA	369	75.78	c.1.9.7	71423
2bm0A	691	77.79	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
1ynpA	317	79.07		
2i6jA	161	81.79		
1tuzA	118	82.13	a.39.1.7	112670
1og6A	298	82.46	c.1.7.1	86984
2pfkA	320	84.79	c.89.1.1	35577
1ayl	541	87.33		
3b40A	417	87.34		
3ct2A	382	87.84