# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	3.07e-18		
2hkvA	149	4.45e-17		
2f22A	144	7.36e-16	a.213.1.2	132795
2p1aA	154	1.38e-14		
2ou6A	190	7.55e-13		
1rxqA	178	4.06e-10	a.213.1.1	105118
3cexA	172	1.08e-09		
2qnlA	162	5.14e-06		
2yqyA	169	1.40e-05		
2q4xA	221	3.129	a.132.1.3	139880
2i7qA	402	6.217		
1or0A	160	7.671	d.153.1.2	93445
1mpgA	282	7.746	a.96.1.3,d.129.1.2	18747,41296
1emvB	134	8.187	d.4.1.1	37135
2qklB	95	8.957		
2vlqB	134	10.66		
1o7kA	131	11.90	d.189.1.1	81144
1fr2B	134	12.37	d.4.1.1	83257
1nu5A	370	13.39	c.1.11.2,d.54.1.1	92183,92184
2gykB	134	13.65	d.4.1.1	135857
2nsfA	261	16.54		
2iqcA	210	19.56		
3b6hA	498	19.84		
1mucA	373	20.76	c.1.11.2,d.54.1.1	29236,38880
2iagA	482	22.22		
1nw1A	429	23.99	d.144.1.8	86286
2cfuA	658	24.85		
1ylhA	560	25.11		
1snlA	103	28.31	a.39.1.7	105820
3d1cA	369	30.10		
1mwpA	96	31.76	d.170.2.1	42453
3bqyA	209	32.63		
3c0bA	334	37.76		
1p1xA	260	38.45	c.1.10.1	104060
1k1fA	72	39.37	a.147.1.1	68007
2aieP	203	39.65		
1tuzA	118	39.81	a.39.1.7	112670
1ur3M	319	40.05	c.1.7.1	99806
3ckcA	527	40.11		
2dk8A	81	40.46		
2bx2L	517	40.83		
2a6tA	271	44.06	a.242.1.1,d.113.1.7	126309,126310
3ct2A	382	45.81		
1h6vA	499	47.03	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
1huxA	270	48.60	c.55.1.5	61278
1nyhA	166	50.74	h.1.23.1	86403
1ws0A	156	51.02		
1zxzA	197	54.29		
1g33A	73	56.05	a.39.1.4	65121
1pyfA	312	56.91	c.1.7.1	95334
1fvpA	231	56.98	c.1.16.2	29556
1g6wA	261	60.62	a.45.1.1,c.47.1.5	17751,33045
1wlzA	105	60.96	a.39.1.7	121024
2g47A	990	61.79		
3b40A	417	62.59		
2a40B	260	64.78	d.151.1.1	126139
2bl0C	142	64.90		
1lmeA	176	65.31	d.167.1.1	84629
1zchA	255	65.63	d.90.1.1	124908
2r2iA	198	66.60		
1iu8A	206	70.44	c.56.4.1	71436
1ituA	369	72.73	c.1.9.7	71423
2a6pA	208	72.75		
1sv0A	85	73.91	a.60.1.1	106035
1q6hA	224	74.34	d.26.1.1	95975
1zkpA	268	75.25	d.157.1.9	125205
2oklA	185	76.36		
1og6A	298	78.18	c.1.7.1	86984
1vbjA	281	79.01		
3grsA	478	80.72	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
2bm0A	691	82.58	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
2c2qA	199	82.83		
1jcjA	260	83.04	c.1.10.1	66499
1nfpA	228	83.39	c.1.16.2	29555
2f2gA	221	84.94	a.132.1.3	132816
1pl5A	142	86.12	h.1.23.1	104186
1n5nA	180	86.58	d.167.1.1	85336
1rl4A	188	89.75	d.167.1.1	97636