# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qe9A 178 2.93e-21 2hkvA 149 7.60e-20 2f22A 144 5.03e-19 a.213.1.2 132795 2p1aA 154 1.33e-17 2ou6A 190 1.18e-14 1rxqA 178 5.81e-12 a.213.1.1 105118 3cexA 172 1.38e-11 2qnlA 162 6.54e-08 2yqyA 169 1.71e-06 2nsfA 261 0.07831 2gykB 134 0.5073 d.4.1.1 135857 1emvB 134 1.305 d.4.1.1 37135 2vlqB 134 1.445 2i7qA 402 2.112 1fr2B 134 2.910 d.4.1.1 83257 1mwpA 96 7.777 d.170.2.1 42453 2qklB 95 9.112 1nu5A 370 11.04 c.1.11.2,d.54.1.1 92183,92184 1o7kA 131 11.29 d.189.1.1 81144 2dk8A 81 11.36 3d1cA 369 13.61 1mucA 373 14.83 c.1.11.2,d.54.1.1 29236,38880 1cvrA 435 16.52 b.1.18.12,c.17.1.2 21949,31006 2oqyA 391 16.64 1tyhA 248 17.38 a.132.1.3 107458 1ppjA 446 17.66 d.185.1.1,d.185.1.1 104252,104253 2g47A 990 20.27 1yw1A 442 20.35 c.1.16.4 124130 2pfkA 320 22.13 c.89.1.1 35577 2q4xA 221 25.84 a.132.1.3 139880 1ztpA 251 26.55 d.86.1.2 125649 1kv5A 250 26.57 c.1.1.1 73052 1btmA 252 26.82 c.1.1.1 28513 1atnD 260 27.24 d.151.1.1 41793 2br9A 234 28.40 1mpgA 282 28.62 a.96.1.3,d.129.1.2 18747,41296 1tpfA 250 29.32 c.1.1.1 28467 2a40B 260 29.96 d.151.1.1 126139 3ct2A 382 30.60 1g33A 73 31.53 a.39.1.4 65121 7ceiB 206 31.70 d.4.1.1 37134 1snlA 103 33.55 a.39.1.7 105820 2pgeA 377 35.43 2a1dD 329 35.53 1b3qA 379 36.12 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1ur3M 319 37.40 c.1.7.1 99806 2b05A 246 38.73 2iqcA 210 39.34 2vjqA 428 39.82 1pyfA 312 39.92 c.1.7.1 95334 3c0bA 334 40.17 2qcxA 263 40.92 1og6A 298 43.69 c.1.7.1 86984 2bm0A 691 45.80 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2i09A 403 46.75 c.76.1.5,d.327.1.1 136946,136947 1zelA 298 47.14 1g8jA 825 47.71 b.52.2.2,c.81.1.1 26924,35332 2og9A 393 47.72 1sbxA 106 48.44 a.6.1.4 105414 1amk 251 49.29 2qv6A 268 50.04 1m6jA 261 51.93 c.1.1.1 78693 2r2iA 198 52.10 1uxtA 501 54.59 c.82.1.1 108125 1qcrA 446 54.88 d.185.1.1,d.185.1.1 59025,59026 1pfkA 320 56.34 c.89.1.1 35575 1iu8A 206 57.24 c.56.4.1 71436 1b43A 340 57.87 a.60.7.1,c.120.1.2 18092,33362 1ynpA 317 58.42 2a6tA 271 61.37 a.242.1.1,d.113.1.7 126309,126310 1cfpA 92 62.32 a.39.1.2 17172 1n55A 251 65.24 c.1.1.1 80007 1wlzA 105 65.71 a.39.1.7 121024 1auiB 169 65.77 a.39.1.5 17325 3b40A 417 65.87 1d5nA 205 66.98 a.2.11.1,d.44.1.1 15762,38687 1gveA 327 67.52 c.1.7.1 70597 2riqA 160 67.74 3ckcA 527 69.08 2yr1A 257 70.58 2i6jA 161 73.33 1k9uA 78 73.59 a.39.1.10 84348 1a4pA 96 76.01 a.39.1.2 17176 2gl5A 410 76.85 c.1.11.2,d.54.1.1 135336,135337 1or0A 160 77.56 d.153.1.2 93445 2opjA 327 78.60 2f2gA 221 78.89 a.132.1.3 132816 1h6vA 499 80.02 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1u8xX 472 80.11 c.2.1.5,d.162.1.2 107741,107742 6pfkA 319 81.05 c.89.1.1 35583 1k1fA 72 81.66 a.147.1.1 68007 5palA 109 83.94 a.39.1.4 17215 1a76 326 85.18 3b5eA 223 85.54 2j27A 250 85.63 1qmuA 380 85.70 b.3.2.1,c.56.5.1 22534,33827 2o02A 230 85.72 1h4vB 421 87.73 c.51.1.1,d.104.1.1 60624,60625 1tzzA 392 87.99 c.1.11.2,d.54.1.1 112896,112897 2bl0C 142 89.54