# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	4.07e-15		
2hkvA	149	9.76e-15		
2f22A	144	6.70e-14	a.213.1.2	132795
2p1aA	154	2.24e-12		
2ou6A	190	8.05e-11		
1rxqA	178	2.39e-08	a.213.1.1	105118
3cexA	172	3.38e-08		
2yqyA	169	3.61e-05		
2qnlA	162	3.94e-05		
2nsfA	261	1.713		
1or0A	160	4.599	d.153.1.2	93445
2i7qA	402	13.95		
1mpgA	282	17.09	a.96.1.3,d.129.1.2	18747,41296
2q4xA	221	18.77	a.132.1.3	139880
2a40B	260	19.25	d.151.1.1	126139
1psrA	100	20.99	a.39.1.2	17180
1snlA	103	21.97	a.39.1.7	105820
2a6pA	208	23.46		
2gykB	134	24.05	d.4.1.1	135857
2g47A	990	31.20		
2au7A	175	31.56		
1nw1A	429	32.23	d.144.1.8	86286
2r2iA	198	33.29		
2c2qA	199	33.37		
1zchA	255	36.58	d.90.1.1	124908
2dk8A	81	37.64		
2vlqB	134	38.36		
2aieP	203	39.11		
3d1cA	369	40.06		
1tuzA	118	40.07	a.39.1.7	112670
1wxxA	382	41.01	b.122.1.9,c.66.1.51	121418,121419
1pyfA	312	41.10	c.1.7.1	95334
1unnC	115	47.32	d.240.1.1	99680
2oqyA	391	47.96		
2iqcA	210	49.54		
1emvB	134	50.59	d.4.1.1	37135
3b5eA	223	52.10		
3b6hA	498	54.94		
1ni5A	433	57.97	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
1huxA	270	59.59	c.55.1.5	61278
2iagA	482	59.87		
1nfpA	228	61.17	c.1.16.2	29555
1og6A	298	62.34	c.1.7.1	86984
1fr2B	134	63.58	d.4.1.1	83257
1mwpA	96	63.89	d.170.2.1	42453
1ylhA	560	63.99		
2okuA	131	65.46		
1atnD	260	67.17	d.151.1.1	41793
2a1dD	329	67.77		
1x84A	189	69.16	d.113.1.2	121795
2oklA	185	70.67		
1mucA	373	70.86	c.1.11.2,d.54.1.1	29236,38880
1tyhA	248	71.70	a.132.1.3	107458
2epiA	100	71.71		
1ur3M	319	71.80	c.1.7.1	99806
2cfuA	658	72.23		
2bm0A	691	73.07	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
1ztpA	251	73.76	d.86.1.2	125649
1q2lA	939	75.14	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
1lmeA	176	75.42	d.167.1.1	84629
1uswA	260	77.96	c.69.1.17	99895
2c2pA	199	78.19		
1o7kA	131	78.93	d.189.1.1	81144
1hlb	158	80.25		
2qcxA	263	80.46		
3c7jA	237	81.45		
1iu8A	206	83.56	c.56.4.1	71436
1wlzA	105	87.63	a.39.1.7	121024
1zceA	155	87.76	b.122.1.8	124907
2bx2L	517	89.07		
1ynpA	317	89.09