# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	2.70e-16		
2hkvA	149	7.74e-16		
2f22A	144	6.05e-15	a.213.1.2	132795
2p1aA	154	2.42e-13		
2ou6A	190	1.67e-11		
1rxqA	178	5.96e-09	a.213.1.1	105118
3cexA	172	9.11e-09		
2qnlA	162	1.38e-05		
2yqyA	169	1.91e-05		
2nsfA	261	1.960		
1or0A	160	3.708	d.153.1.2	93445
1mpgA	282	10.80	a.96.1.3,d.129.1.2	18747,41296
2gykB	134	15.12	d.4.1.1	135857
2i7qA	402	15.97		
1snlA	103	16.85	a.39.1.7	105820
2a6pA	208	21.72		
2q4xA	221	22.49	a.132.1.3	139880
2au7A	175	26.12		
1psrA	100	27.28	a.39.1.2	17180
2a40B	260	28.33	d.151.1.1	126139
2cfuA	658	28.64		
2vlqB	134	30.63		
1tuzA	118	31.09	a.39.1.7	112670
2aieP	203	31.95		
1nw1A	429	33.45	d.144.1.8	86286
1pyfA	312	33.52	c.1.7.1	95334
3d1cA	369	34.14		
1unnC	115	34.45	d.240.1.1	99680
1emvB	134	35.06	d.4.1.1	37135
2r2iA	198	39.00		
2g47A	990	39.59		
2c2qA	199	40.17		
1fr2B	134	42.72	d.4.1.1	83257
1ni5A	433	49.02	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2oqyA	391	50.37		
2bx2L	517	51.34		
2okuA	131	52.65		
3b5eA	223	53.51		
2dk8A	81	55.00		
2oklA	185	55.23		
1zchA	255	55.95	d.90.1.1	124908
1nu5A	370	56.51	c.1.11.2,d.54.1.1	92183,92184
1uswA	260	56.69	c.69.1.17	99895
2tscA	264	58.46	d.117.1.1	40952
2i09A	403	60.43	c.76.1.5,d.327.1.1	136946,136947
1iu8A	206	61.00	c.56.4.1	71436
1mucA	373	62.62	c.1.11.2,d.54.1.1	29236,38880
1lyvA	306	62.93	c.45.1.2	74348
1huxA	270	64.63	c.55.1.5	61278
3b6hA	498	64.77		
1zceA	155	66.39	b.122.1.8	124907
1mwpA	96	66.80	d.170.2.1	42453
2og9A	393	67.68		
1atnD	260	69.95	d.151.1.1	41793
2iagA	482	70.48		
1ws0A	156	71.95		
1ur3M	319	72.02	c.1.7.1	99806
1wxxA	382	72.20	b.122.1.9,c.66.1.51	121418,121419
1ylhA	560	73.28		
1rp3A	239	73.41	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2a1dD	329	73.94		
1ohvA	472	74.01	c.67.1.4	93031
1lmeA	176	77.06	d.167.1.1	84629
1o7kA	131	77.17	d.189.1.1	81144
1nfpA	228	79.17	c.1.16.2	29555
1wi9A	72	80.39	a.4.5.47	114663
2j27A	250	82.23		
2os0A	188	82.36		
2c2pA	199	86.84