# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	9.06e-17		
2hkvA	149	3.26e-16		
2f22A	144	1.96e-15	a.213.1.2	132795
2p1aA	154	1.11e-13		
2ou6A	190	5.41e-12		
1rxqA	178	3.50e-09	a.213.1.1	105118
3cexA	172	5.02e-09		
2qnlA	162	1.00e-05		
2yqyA	169	1.01e-05		
2nsfA	261	0.7728		
1or0A	160	4.413	d.153.1.2	93445
2i7qA	402	7.381		
1psrA	100	9.392	a.39.1.2	17180
2gykB	134	10.14	d.4.1.1	135857
1snlA	103	13.80	a.39.1.7	105820
2a6pA	208	18.20		
2vlqB	134	19.25		
2a40B	260	19.68	d.151.1.1	126139
2g47A	990	20.14		
1emvB	134	24.83	d.4.1.1	37135
1unnC	115	25.04	d.240.1.1	99680
2r2iA	198	25.64		
2aieP	203	28.14		
2au7A	175	29.70		
2q4xA	221	31.91	a.132.1.3	139880
1nw1A	429	32.64	d.144.1.8	86286
1fr2B	134	34.59	d.4.1.1	83257
1tuzA	118	34.88	a.39.1.7	112670
2c2qA	199	35.45		
3d1cA	369	37.45		
1pyfA	312	39.32	c.1.7.1	95334
1mpgA	282	43.42	a.96.1.3,d.129.1.2	18747,41296
2dk8A	81	44.01		
3b5eA	223	45.76		
2iqcA	210	45.93		
1o7kA	131	47.71	d.189.1.1	81144
2cfuA	658	48.35		
2oklA	185	48.77		
2qcxA	263	49.84		
1zchA	255	50.60	d.90.1.1	124908
1mucA	373	50.67	c.1.11.2,d.54.1.1	29236,38880
2bx2L	517	53.27		
1ni5A	433	55.26	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2okuA	131	58.42		
1ws0A	156	60.54		
1wxxA	382	60.80	b.122.1.9,c.66.1.51	121418,121419
1atnD	260	61.45	d.151.1.1	41793
1x84A	189	61.59	d.113.1.2	121795
2i09A	403	61.89	c.76.1.5,d.327.1.1	136946,136947
1mwpA	96	62.31	d.170.2.1	42453
1iu8A	206	63.29	c.56.4.1	71436
2oqyA	391	64.65		
1uswA	260	66.19	c.69.1.17	99895
1zxzA	197	66.87		
1ohvA	472	66.87	c.67.1.4	93031
2iagA	482	67.52		
3b6hA	498	68.93		
1tyhA	248	69.45	a.132.1.3	107458
1nfpA	228	69.97	c.1.16.2	29555
1lyvA	306	70.04	c.45.1.2	74348
2h9eC	84	70.36	g.22.1.1	136254
1ztpA	251	73.00	d.86.1.2	125649
1lmeA	176	75.43	d.167.1.1	84629
1q2lA	939	76.46	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
1wlzA	105	77.17	a.39.1.7	121024
1cvrA	435	77.20	b.1.18.12,c.17.1.2	21949,31006
2c2pA	199	78.11		
2a1dD	329	78.88		
2os0A	188	79.61		
2j27A	250	80.89		
1zceA	155	81.73	b.122.1.8	124907
1ur3M	319	83.31	c.1.7.1	99806
1og6A	298	83.78	c.1.7.1	86984
1huxA	270	85.61	c.55.1.5	61278
2tscA	264	86.38	d.117.1.1	40952
2dp3A	257	86.76		
2b05A	246	88.43		
2o8pA	227	89.97