# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	1.01e-17		
2hkvA	149	1.43e-16		
2f22A	144	6.26e-16	a.213.1.2	132795
2p1aA	154	2.84e-13		
2ou6A	190	4.14e-12		
3cexA	172	2.89e-09		
1rxqA	178	3.16e-09	a.213.1.1	105118
2qnlA	162	1.55e-06		
2yqyA	169	0.000137		
2nsfA	261	0.3804		
2i7qA	402	3.985		
1mwpA	96	11.05	d.170.2.1	42453
2gykB	134	17.96	d.4.1.1	135857
1u8xX	472	20.22	c.2.1.5,d.162.1.2	107741,107742
2vlqB	134	20.86		
1emvB	134	21.69	d.4.1.1	37135
2f7tA	227	21.74		
2qcxA	263	22.46		
1nu5A	370	23.07	c.1.11.2,d.54.1.1	92183,92184
1tyhA	248	25.80	a.132.1.3	107458
1rxxA	421	26.86	d.126.1.4	98061
1wlzA	105	35.56	a.39.1.7	121024
1ywwA	85	36.34		
1zchA	255	38.54	d.90.1.1	124908
2j9iA	421	40.81		
1vr0A	247	40.91	c.148.1.1	120428
3ct2A	382	42.04		
1ppjF	110	42.53	f.27.1.1	104262
2qklB	95	46.54		
1nkpA	88	47.30	a.38.1.1	80573
1e42A	258	49.28	b.1.10.1,d.105.1.1	22316,40792
2pthA	193	49.70	c.56.3.1	33793
2gscA	128	53.53		
1wovA	250	54.48	a.132.1.1	121124
1iu8A	206	55.06	c.56.4.1	71436
2ci1A	275	55.86		
1p71A	94	57.37	a.55.1.1	87840
2o8pA	227	57.84		
1psrA	100	59.05	a.39.1.2	17180
1qu9A	128	60.38	d.79.1.1	39755
1hlb	158	60.46		
1rybA	212	61.21	c.56.3.1	98098
1yr2A	741	64.50		
2iqcA	210	65.01		
2dh2A	424	66.77		
1ivhA	394	66.86	a.29.3.1,e.6.1.1	16608,42869
3c7jA	237	67.73		
1mpgA	282	68.25	a.96.1.3,d.129.1.2	18747,41296
2d29A	387	68.81	a.29.3.1,e.6.1.1	131157,131158
1wdcB	156	69.07	a.39.1.5	17302
1oniA	137	75.26	d.79.1.1	87144
2a0uA	383	77.22		
2vigA	391	77.62		
2djiA	590	78.89	c.31.1.3,c.36.1.5,c.36.1.9	131544,131545,131546
2jbrA	422	81.07		
1dcsA	311	81.30	b.82.2.1	28124
2h9eC	84	82.32	g.22.1.1	136254
3c0bA	334	86.25		
2g47A	990	86.52		
1rykA	69	86.85	a.60.11.1	98105
2h27A	73	89.94	a.4.13.2	135993