# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	3.14e-18		
2hkvA	149	3.19e-17		
2f22A	144	4.15e-16	a.213.1.2	132795
2p1aA	154	4.32e-15		
2ou6A	190	1.17e-12		
1rxqA	178	1.24e-09	a.213.1.1	105118
3cexA	172	1.74e-09		
2yqyA	169	4.71e-06		
2qnlA	162	1.54e-05		
2i7qA	402	7.089		
2gykB	134	9.496	d.4.1.1	135857
2vlqB	134	11.23		
1mucA	373	11.94	c.1.11.2,d.54.1.1	29236,38880
1zchA	255	14.43	d.90.1.1	124908
1or0A	160	17.33	d.153.1.2	93445
2cfuA	658	17.47		
1o7kA	131	17.52	d.189.1.1	81144
1nu5A	370	17.56	c.1.11.2,d.54.1.1	92183,92184
3d1cA	369	19.76		
1mpgA	282	19.93	a.96.1.3,d.129.1.2	18747,41296
1mwpA	96	21.11	d.170.2.1	42453
2nsfA	261	21.32		
1nw1A	429	25.02	d.144.1.8	86286
1emvB	134	30.13	d.4.1.1	37135
1wlzA	105	32.93	a.39.1.7	121024
2oqyA	391	33.11		
1fr2B	134	36.82	d.4.1.1	83257
3ct2A	382	39.22		
1ni5A	433	40.72	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2bm0A	691	42.56	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
2g47A	990	47.37		
3b40A	417	47.84		
2dk8A	81	48.74		
2aieP	203	49.27		
2a40B	260	49.32	d.151.1.1	126139
2a6pA	208	51.34		
2c2pA	199	52.53		
2q4xA	221	52.78	a.132.1.3	139880
1k1fA	72	54.12	a.147.1.1	68007
2c2qA	199	54.38		
2r2iA	198	54.81		
1h6vA	499	56.14	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2og9A	393	57.79		
1p1xA	260	59.09	c.1.10.1	104060
1ki1B	352	59.72	a.87.1.1,b.55.1.1	72497,72498
1m7jA	484	59.81	b.92.1.6,b.92.1.6,c.1.9.11	78732,78733,78734
3bqyA	209	60.58		
2pfkA	320	61.05	c.89.1.1	35577
1zfjA	491	62.76	c.1.5.1,d.37.1.1,d.37.1.1	28638,38540,38541
2i6jA	161	63.46		
1snlA	103	64.54	a.39.1.7	105820
2au7A	175	65.65		
1ur3M	319	66.85	c.1.7.1	99806
1pyfA	312	68.71	c.1.7.1	95334
1ztpA	251	69.73	d.86.1.2	125649
1unnC	115	69.75	d.240.1.1	99680
1atnD	260	70.13	d.151.1.1	41793
1tuzA	118	76.85	a.39.1.7	112670
3c0bA	334	77.45		
1iu8A	206	81.53	c.56.4.1	71436
1huxA	270	84.55	c.55.1.5	61278
1ituA	369	87.54	c.1.9.7	71423