# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qe9A 178 4.12e-18 2hkvA 149 6.13e-17 2f22A 144 7.97e-16 a.213.1.2 132795 2p1aA 154 1.67e-14 2ou6A 190 9.27e-12 1rxqA 178 1.27e-09 a.213.1.1 105118 3cexA 172 3.18e-09 2yqyA 169 1.63e-05 2qnlA 162 4.62e-05 2ow6A 1045 0.4561 2podA 410 0.4996 2p8bA 369 1.116 1p1xA 260 1.646 c.1.10.1 104060 1htyA 1015 1.944 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1qwnA 1045 4.448 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2fpqA 444 4.707 1og6A 298 4.769 c.1.7.1 86984 2q4xA 221 4.927 a.132.1.3 139880 1ec7A 446 4.952 c.1.11.2,d.54.1.1 29218,38862 3bjsA 428 5.368 1lmeA 176 6.356 d.167.1.1 84629 2ovlA 371 7.623 2vlqB 134 8.439 1topA 162 10.96 a.39.1.5 17223 1ynpA 317 11.21 2bl0C 142 11.59 1goxA 369 11.61 c.1.4.1 28607 1v93A 296 12.81 c.1.23.1 100532 2tscA 264 12.81 d.117.1.1 40952 2i5iA 263 13.38 2og9A 393 13.40 2v4bA 300 14.23 1qpaA 345 14.24 a.93.1.1 18585 1huxA 270 14.47 c.55.1.5 61278 2oqyA 391 15.15 1jf2A 195 15.97 a.39.1.5 62930 1emvB 134 16.08 d.4.1.1 37135 2al2A 436 16.10 c.1.11.1,d.54.1.1 126953,126954 1n5nA 180 16.63 d.167.1.1 85336 1o6zA 303 17.12 c.2.1.5,d.162.1.1 81107,81108 1jcjA 260 17.59 c.1.10.1 66499 1txdA 385 18.12 a.87.1.1,b.55.1.1 107422,107423 2obhA 143 18.97 1tyhA 248 19.16 a.132.1.3 107458 1ws0A 156 19.61 1ak5 503 20.43 2j0eA 266 20.74 2boqA 331 20.78 3bqyA 209 21.80 1v3yA 192 22.76 d.167.1.1 113508 1bqg 451 23.14 1aiqA 264 23.17 d.117.1.1 40967 1efyA 350 25.04 a.41.1.1,d.166.1.2 17413,42275 1z0wA 207 25.75 2os0A 188 26.05 1gwuA 309 26.40 a.93.1.1 83351 2g47A 990 26.61 1b0uA 262 26.88 c.37.1.12 32370 1nu5A 370 27.07 c.1.11.2,d.54.1.1 92183,92184 1ev5A 264 27.28 d.117.1.1 40935 1g87A 614 27.72 a.102.1.2,b.2.2.2 83275,83276 1evfA 264 27.76 d.117.1.1 40932 1zchA 255 28.58 d.90.1.1 124908 3d1cA 369 28.92 1rl4A 188 29.00 d.167.1.1 97636 1zd1A 284 29.04 1b9bA 255 29.63 c.1.1.1 28531 2gykB 134 30.50 d.4.1.1 135857 1ur3M 319 32.02 c.1.7.1 99806 2ze0A 555 32.11 1jihA 531 32.12 d.240.1.1,e.8.1.7 90374,90375 1lqyA 184 32.23 d.167.1.1 74212 2iwbA 246 32.44 1lm4A 194 32.82 d.167.1.1 84626 1n5uA 585 34.06 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 1f82A 424 35.29 d.92.1.7 40307 1wdcC 156 36.94 a.39.1.5 17317 1f48A 589 36.95 c.37.1.10,c.37.1.10 32280,32281 1y6hA 177 37.55 d.167.1.1 116505 1g33A 73 38.22 a.39.1.4 65121 2au7A 175 38.75 1o7kA 131 40.01 d.189.1.1 81144 2ar0A 541 40.73 c.66.1.45 127185 1tzzA 392 41.37 c.1.11.2,d.54.1.1 112896,112897 3d64A 494 41.94 1qqqA 264 42.66 d.117.1.1 40931 1twuA 139 43.71 d.32.1.8 107413 1mpgA 282 43.77 a.96.1.3,d.129.1.2 18747,41296 4cpvA 108 43.88 a.39.1.4 17198 3b6hA 498 43.93 1qgjA 300 46.26 a.93.1.1 18691 1wzlA 585 47.97 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1zowA 313 51.06 1uf2A 1019 51.48 e.28.1.2 99289 1or0A 160 51.89 d.153.1.2 93445 2qn0A 430 52.65 1j6uA 469 55.39 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1schA 294 55.72 a.93.1.1 18685 1l5oA 356 55.84 c.39.1.1 77711 2og2A 359 57.84 1zu4A 320 58.12 3b8dA 363 58.19 1fbaA 361 58.56 c.1.10.1 29120 1unnC 115 58.67 d.240.1.1 99680 1t2bA 397 59.18 1avsA 90 59.74 a.39.1.5 17226 1axwA 265 59.82 d.117.1.1 40938 2hpsA 186 60.42 2bs3C 256 60.60 1cxlA 686 61.07 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 2gp5A 349 61.10 1olmA 403 61.89 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2qptA 550 62.82 1s1eA 224 62.94 a.39.1.5 112007 2qcxA 263 63.99 1yw1A 442 64.64 c.1.16.4 124130 2puzA 419 65.22 1nmmB 286 65.56 c.68.1.2 80662 1ub3A 220 65.88 c.1.10.1 88395 3bhxA 709 66.05 1gy8A 397 66.26 c.2.1.2 83376 2fjuB 799 66.94 1g6wA 261 67.29 a.45.1.1,c.47.1.5 17751,33045 1nm8A 616 69.99 c.43.1.3,c.43.1.3 85872,85873 1gs9A 165 70.34 a.24.1.1 83313 2oz8A 389 72.80 1uarA 285 74.28 c.46.1.2,c.46.1.2 107762,107763 1ppjF 110 74.95 f.27.1.1 104262 1tqnA 486 75.11 a.104.1.1 107238 1hrdA 449 75.19 c.2.1.7,c.58.1.1 30219,33867 2f7lA 455 75.48 1o0yA 260 75.72 c.1.10.1 80756 1vraA 208 76.14 1hh1A 143 76.46 c.52.1.18 61036 1bgvA 449 77.88 c.2.1.7,c.58.1.1 30217,33865 1lqwA 183 78.68 d.167.1.1 74210 1nf2A 268 78.98 c.108.1.10 91849 1k1fA 72 80.26 a.147.1.1 68007 2dk8A 81 80.87 3c96A 415 81.16 2okuA 131 83.31 1jf0A 195 85.45 a.39.1.5 62926 1mdlA 359 85.47 c.1.11.2,d.54.1.1 29247,38891 1ki1B 352 85.61 a.87.1.1,b.55.1.1 72497,72498 2g8oA 264 86.92 d.117.1.1 134779 1gox 370 89.54