# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	5.96e-18		
2hkvA	149	7.14e-17		
2f22A	144	8.30e-16	a.213.1.2	132795
2p1aA	154	8.78e-15		
2ou6A	190	2.29e-12		
1rxqA	178	2.72e-09	a.213.1.1	105118
3cexA	172	3.91e-09		
2yqyA	169	8.68e-06		
2qnlA	162	2.18e-05		
2vlqB	134	7.638		
2gykB	134	8.328	d.4.1.1	135857
2i7qA	402	8.950		
1mucA	373	11.23	c.1.11.2,d.54.1.1	29236,38880
1zchA	255	12.27	d.90.1.1	124908
1mpgA	282	13.72	a.96.1.3,d.129.1.2	18747,41296
1or0A	160	15.32	d.153.1.2	93445
1nu5A	370	17.26	c.1.11.2,d.54.1.1	92183,92184
1o7kA	131	19.38	d.189.1.1	81144
3d1cA	369	20.19		
2oqyA	391	20.69		
2cfuA	658	23.67		
1mwpA	96	24.34	d.170.2.1	42453
1emvB	134	24.70	d.4.1.1	37135
1nw1A	429	30.59	d.144.1.8	86286
3ct2A	382	33.31		
1fr2B	134	35.34	d.4.1.1	83257
2q4xA	221	36.66	a.132.1.3	139880
1ni5A	433	37.18	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
1wlzA	105	38.76	a.39.1.7	121024
2a6pA	208	42.85		
1unnC	115	43.62	d.240.1.1	99680
2aieP	203	45.86		
2dk8A	81	50.35		
1ki1B	352	52.87	a.87.1.1,b.55.1.1	72497,72498
2og9A	393	53.34		
1h6vA	499	54.01	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
3bqyA	209	55.82		
2g47A	990	56.76		
1m7jA	484	56.87	b.92.1.6,b.92.1.6,c.1.9.11	78732,78733,78734
1p1xA	260	58.21	c.1.10.1	104060
1k1fA	72	58.69	a.147.1.1	68007
1uswA	260	60.18	c.69.1.17	99895
1snlA	103	62.06	a.39.1.7	105820
1ztpA	251	62.24	d.86.1.2	125649
2nsfA	261	64.52		
2i6jA	161	66.39		
3b40A	417	69.61		
1wi9A	72	70.07	a.4.5.47	114663
2c2qA	199	70.88		
2c2pA	199	72.28		
1zfjA	491	72.32	c.1.5.1,d.37.1.1,d.37.1.1	28638,38540,38541
1tyhA	248	74.58	a.132.1.3	107458
2iagA	482	76.21		
1pyfA	312	76.65	c.1.7.1	95334
2bm0A	691	76.91	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
2a40B	260	78.27	d.151.1.1	126139
1huxA	270	78.70	c.55.1.5	61278
1qnrA	344	79.05	c.1.8.3	28834
2pfkA	320	79.75	c.89.1.1	35577
3c0bA	334	80.37		
2okuA	131	80.86		
1cvrA	435	81.98	b.1.18.12,c.17.1.2	21949,31006
1nyhA	166	82.04	h.1.23.1	86403
2au7A	175	83.03		
1tuzA	118	83.43	a.39.1.7	112670
2opjA	327	85.73		
1owqA	361	87.19	c.1.8.5,d.26.3.1	104041,104042
1ur3M	319	88.75	c.1.7.1	99806