# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	5.10e-18		
2hkvA	149	5.11e-17		
2f22A	144	5.19e-16	a.213.1.2	132795
2p1aA	154	3.72e-14		
2ou6A	190	3.89e-12		
1rxqA	178	1.44e-09	a.213.1.1	105118
3cexA	172	4.60e-09		
2qnlA	162	1.83e-05		
2yqyA	169	3.32e-05		
1mpgA	282	4.506	a.96.1.3,d.129.1.2	18747,41296
2gykB	134	5.905	d.4.1.1	135857
1nu5A	370	9.637	c.1.11.2,d.54.1.1	92183,92184
1mucA	373	11.16	c.1.11.2,d.54.1.1	29236,38880
1or0A	160	11.76	d.153.1.2	93445
2i7qA	402	13.30		
2vlqB	134	13.33		
1snlA	103	14.51	a.39.1.7	105820
1emvB	134	16.14	d.4.1.1	37135
2iqcA	210	16.44		
1p1xA	260	18.73	c.1.10.1	104060
2cfuA	658	20.28		
2dk8A	81	21.09		
3ct2A	382	22.56		
1o7kA	131	22.89	d.189.1.1	81144
2q4xA	221	24.33	a.132.1.3	139880
2aieP	203	25.18		
3ckcA	527	27.34		
2a40B	260	27.80	d.151.1.1	126139
1zfjA	491	30.86	c.1.5.1,d.37.1.1,d.37.1.1	28638,38540,38541
2oqyA	391	31.67		
1fr2B	134	32.16	d.4.1.1	83257
2au7A	175	35.48		
1zchA	255	35.86	d.90.1.1	124908
3d1cA	369	40.27		
2f2uA	402	41.62		
1g33A	73	41.71	a.39.1.4	65121
1nw1A	429	42.17	d.144.1.8	86286
1zxzA	197	43.10		
1pyfA	312	45.98	c.1.7.1	95334
3b40A	417	46.91		
2qklB	95	48.35		
1jcjA	260	48.69	c.1.10.1	66499
1twfK	120	50.43	d.74.3.2	112736
2og9A	393	50.94		
1n5nA	180	51.61	d.167.1.1	85336
1ituA	369	53.49	c.1.9.7	71423
2r2iA	198	53.63		
1rl4A	188	53.72	d.167.1.1	97636
2gl5A	410	54.73	c.1.11.2,d.54.1.1	135336,135337
1fvpA	231	55.53	c.1.16.2	29556
1hztA	190	56.09	d.113.1.2	61459
2iagA	482	56.85		
2i09A	403	57.32	c.76.1.5,d.327.1.1	136946,136947
1ws0A	156	58.56		
2tscA	264	58.56	d.117.1.1	40952
1ur3M	319	59.07	c.1.7.1	99806
1ppjF	110	60.05	f.27.1.1	104262
2c2qA	199	61.56		
1x84A	189	62.83	d.113.1.2	121795
1ynpA	317	65.78		
3b6hA	498	65.83		
1atnD	260	66.14	d.151.1.1	41793
1og6A	298	67.61	c.1.7.1	86984
1uswA	260	69.90	c.69.1.17	99895
1zceA	155	72.72	b.122.1.8	124907
1mwpA	96	74.97	d.170.2.1	42453
1b3qA	379	76.39	a.30.2.1,b.40.7.1,d.122.1.3	16993,25454,41112
1tuzA	118	77.07	a.39.1.7	112670
2g47A	990	77.56		
1lmeA	176	78.48	d.167.1.1	84629
2bx2L	517	80.94		
1zkpA	268	81.20	d.157.1.9	125205
1nyhA	166	82.70	h.1.23.1	86403
7ceiB	206	82.78	d.4.1.1	37134
1vbjA	281	84.29		
2pp3A	398	84.96		
1axwA	265	85.25	d.117.1.1	40938
1ylhA	560	86.43		
2nsfA	261	86.65		
2gp5A	349	87.91		
1ut8A	291	88.91	a.60.7.1,c.120.1.2	99908,99909