# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	2.71e-18		
2hkvA	149	2.21e-17		
2f22A	144	1.49e-16	a.213.1.2	132795
2p1aA	154	5.67e-15		
2ou6A	190	3.67e-12		
1rxqA	178	5.36e-10	a.213.1.1	105118
3cexA	172	2.32e-09		
2qnlA	162	3.57e-06		
2yqyA	169	1.15e-05		
2gykB	134	2.907	d.4.1.1	135857
2i7qA	402	3.414		
1emvB	134	6.087	d.4.1.1	37135
2vlqB	134	6.766		
1o7kA	131	7.678	d.189.1.1	81144
1or0A	160	8.903	d.153.1.2	93445
1mpgA	282	11.60	a.96.1.3,d.129.1.2	18747,41296
1fr2B	134	12.49	d.4.1.1	83257
2q4xA	221	12.89	a.132.1.3	139880
1nw1A	429	12.95	d.144.1.8	86286
1snlA	103	13.43	a.39.1.7	105820
2dk8A	81	17.28		
2nsfA	261	17.40		
1mwpA	96	19.27	d.170.2.1	42453
1zchA	255	19.66	d.90.1.1	124908
2a40B	260	20.71	d.151.1.1	126139
3d1cA	369	22.89		
1nu5A	370	23.27	c.1.11.2,d.54.1.1	92183,92184
1mucA	373	23.86	c.1.11.2,d.54.1.1	29236,38880
2cfuA	658	25.39		
1twfK	120	26.80	d.74.3.2	112736
2oqyA	391	27.73		
2iqcA	210	28.21		
2r2iA	198	30.62		
1uswA	260	31.26	c.69.1.17	99895
1atnD	260	31.92	d.151.1.1	41793
2au7A	175	35.45		
1b3qA	379	37.28	a.30.2.1,b.40.7.1,d.122.1.3	16993,25454,41112
2qklB	95	37.84		
2i09A	403	41.95	c.76.1.5,d.327.1.1	136946,136947
1nfpA	228	43.04	c.1.16.2	29555
7ceiB	206	43.95	d.4.1.1	37134
1d5nA	205	44.94	a.2.11.1,d.44.1.1	15762,38687
2g47A	990	45.49		
1zfjA	491	45.53	c.1.5.1,d.37.1.1,d.37.1.1	28638,38540,38541
3b40A	417	46.45		
1ztpA	251	48.42	d.86.1.2	125649
2bx2L	517	48.61		
2tscA	264	48.98	d.117.1.1	40952
3ckcA	527	49.54		
3ct2A	382	49.95		
1tuzA	118	54.81	a.39.1.7	112670
2aieP	203	57.63		
2c2qA	199	58.31		
3b5eA	223	60.79		
1ylhA	560	60.86		
1nyhA	166	62.45	h.1.23.1	86403
2iagA	482	63.85		
3b6hA	498	67.75		
1g33A	73	67.78	a.39.1.4	65121
1unnC	115	67.95	d.240.1.1	99680
1zkpA	268	69.00	d.157.1.9	125205
1og6A	298	70.71	c.1.7.1	86984
1ws0A	156	71.19		
1ur3M	319	75.78	c.1.7.1	99806
1g6wA	261	76.17	a.45.1.1,c.47.1.5	17751,33045
2i6jA	161	76.93		
1pyfA	312	77.76	c.1.7.1	95334
2bm0A	691	80.15	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
1e2aA	105	80.52	a.7.2.1	16322
1wlzA	105	80.93	a.39.1.7	121024
1cvrA	435	81.32	b.1.18.12,c.17.1.2	21949,31006
1hztA	190	81.47	d.113.1.2	61459
1qmuA	380	82.38	b.3.2.1,c.56.5.1	22534,33827
1yw1A	442	83.35	c.1.16.4	124130
1zxzA	197	84.57		
1n5nA	180	88.73	d.167.1.1	85336
1ynpA	317	89.26		
1ut8A	291	89.42	a.60.7.1,c.120.1.2	99908,99909