# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	8.95e-18		
2hkvA	149	2.64e-17		
2f22A	144	3.51e-16	a.213.1.2	132795
2p1aA	154	1.68e-13		
2ou6A	190	1.55e-11		
3cexA	172	8.39e-09		
1rxqA	178	1.65e-08	a.213.1.1	105118
2qnlA	162	2.20e-05		
2yqyA	169	0.000325		
2i7qA	402	2.113		
1mpgA	282	2.269	a.96.1.3,d.129.1.2	18747,41296
1or0A	160	5.279	d.153.1.2	93445
1ii2A	524	8.158	c.91.1.1,c.109.1.1	66146,66147
2au7A	175	9.767		
1ppjF	110	9.774	f.27.1.1	104262
2f2uA	402	10.03		
1g6wA	261	12.07	a.45.1.1,c.47.1.5	17751,33045
2bx2L	517	12.41		
1ylhA	560	13.75		
1d5nA	205	13.80	a.2.11.1,d.44.1.1	15762,38687
1bm9A	122	14.30	a.4.5.7	16116
2iqcA	210	15.63		
1or3A	165	17.40	a.24.1.1	16522
1yisA	478	17.79		
2pjpA	121	19.34		
1psrA	100	20.02	a.39.1.2	17180
1ayl	541	21.00		
2vduE	254	21.32		
1mwpA	96	21.86	d.170.2.1	42453
2qcxA	263	22.82		
1nyhA	166	24.26	h.1.23.1	86403
2nsfA	261	27.10		
2avkA	136	29.88		
1tyhA	248	32.02	a.132.1.3	107458
1tuzA	118	33.50	a.39.1.7	112670
1wlzA	105	34.17	a.39.1.7	121024
2a1dD	329	34.97		
1pl5A	142	39.64	h.1.23.1	104186
2aieP	203	40.12		
2cfuA	658	41.63		
1zchA	255	42.25	d.90.1.1	124908
1jwhC	215	43.60	g.41.4.1	71915
1kb9G	125	44.00	f.27.1.1	77322
1twfK	120	45.01	d.74.3.2	112736
2idgA	175	46.68		
1x4tA	92	47.06	a.2.15.1	121698
1zkpA	268	49.43	d.157.1.9	125205
2qklB	95	49.46		
1z54A	132	49.48	d.38.1.1	124450
1gd5A	130	49.50	d.189.1.1	60439
2dk8A	81	50.09		
2pthA	193	50.78	c.56.3.1	33793
1lvaA	258	50.80	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2dkoB	103	53.04		
2egjA	128	53.37		
1siqA	392	53.71	a.29.3.1,e.6.1.1	105585,105586
2os0A	188	56.19		
2vigA	391	56.52		
1t5oA	351	57.67	c.124.1.5	106459
4cpvA	108	59.16	a.39.1.4	17198
2bqxA	173	62.86		
1g33A	73	64.81	a.39.1.4	65121
1on2A	142	64.92	a.4.5.24,a.76.1.1	87103,87104
1uddA	226	65.94	a.132.1.3	107776
2q4xA	221	67.27	a.132.1.3	139880
2gykB	134	67.30	d.4.1.1	135857
1bz4A	144	68.48	a.24.1.1	16521
1wi9A	72	70.65	a.4.5.47	114663
2uuqA	414	71.82		
2oklA	185	72.34		
1snlA	103	73.98	a.39.1.7	105820
2pg0A	385	75.76		
1gs9A	165	76.77	a.24.1.1	83313
1fvpA	231	76.88	c.1.16.2	29556
2juaA	102	79.46		
2nutA	769	79.68		
2o6kA	81	80.74		
1pzxA	289	80.77	c.119.1.1	95484
2e9xA	149	85.90