# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qe9A 178 5.57e-11 2ou6A 190 8.16e-09 2hkvA 149 9.98e-09 2f22A 144 3.81e-08 a.213.1.2 132795 2p1aA 154 6.76e-08 3cexA 172 4.29e-07 1rxqA 178 6.13e-06 a.213.1.1 105118 2qnlA 162 0.000268 2yqyA 169 0.001432 2nsfA 261 0.01471 2qklB 95 1.932 1i6pA 220 5.599 c.53.2.1 61848 1unlD 208 8.815 a.74.1.1 113326 2ovkC 159 11.10 2a6tA 271 11.55 a.242.1.1,d.113.1.7 126309,126310 1xfxO 149 13.67 a.39.1.5 121955 1bmtA 246 13.79 a.46.1.1,c.23.6.1 17757,31235 2i53A 258 14.54 1sdoA 203 14.71 c.52.1.21 98809 1vkjA 285 14.74 c.37.1.5 108666 2qkmB 266 16.28 2qacA 146 16.37 1kz1A 159 16.71 c.16.1.1 73318 1lm5A 214 16.86 d.211.2.1 74029 1vrbA 342 17.81 b.82.2.11 120450 1bdmA 327 18.47 c.2.1.5,d.162.1.1 30137,42104 2q1zA 184 20.31 1nstA 325 20.35 c.37.1.5 31951 2f7tA 227 21.15 1mvwC 147 21.85 i.15.1.1 79525 1b79A 119 22.14 a.81.1.1 18451 2o8iA 165 23.01 1topA 162 23.22 a.39.1.5 17223 1wdcB 156 24.93 a.39.1.5 17302 3brqA 296 26.27 2h27A 73 26.75 a.4.13.2 135993 1gk1B 522 27.05 1wdcC 156 27.27 a.39.1.5 17317 2iqcA 210 27.97 1qu9A 128 29.15 d.79.1.1 39755 2gwmA 200 29.20 1jf2A 195 29.56 a.39.1.5 62930 1nd6A 354 29.77 c.60.1.2 80407 1dpgA 485 30.89 c.2.1.3,d.81.1.5 30074,39989 1jf0A 195 31.99 a.39.1.5 62926 1o08A 221 32.22 c.108.1.6 86525 2mnr 357 32.54 1uhnA 189 32.70 a.39.1.5 99399 2ejqA 130 32.79 2zfdA 226 32.94 1h4lD 147 33.17 a.74.1.1 70873 1kk8B 139 33.73 a.39.1.5 77430 3cetA 334 34.15 1us7B 265 34.86 a.205.1.1 99858 2cfuA 658 34.98 1jr5A 90 35.02 a.150.1.1 67113 2rgyA 290 35.40 3craA 265 35.74 2o20A 332 35.89 1qv1A 195 36.52 a.39.1.5 96347 1y7tA 327 36.99 c.2.1.5,d.162.1.1 122718,122719 3b57A 209 42.60 2hpaA 342 42.81 c.60.1.2 33985 1ofuA 320 43.09 c.32.1.1,d.79.2.1 86972,86973 1x25A 128 43.86 d.79.1.1 121619 1scfA 273 43.92 a.26.1.2 16873 1vqoP 149 44.53 a.94.1.1 120377 1jftA 340 46.42 a.35.1.5,c.93.1.1 66652,66653 1mdl 359 46.82 1el4A 195 47.34 a.39.1.5 59453 1rpa 342 49.20 1xl7A 612 49.79 c.43.1.3,c.43.1.3 115438,115439 1br1B 150 52.60 a.39.1.5 17309 1qkkA 155 54.01 c.23.1.1 31104 1vpwA 340 55.31 a.35.1.5,c.93.1.1 17087,35680 1zrhA 274 56.96 1qyrA 252 57.03 c.66.1.24 104657 2aaoA 166 57.04 1vzyA 291 57.44 d.193.1.1,g.81.1.1 114042,114043 1aj2A 282 57.46 c.1.21.1 29665 1k7kA 221 58.61 c.51.4.1 72104 2oqoA 200 58.62 1e42A 258 58.79 b.1.10.1,d.105.1.1 22316,40792 1vb5A 276 59.14 c.124.1.5 113604 1hypA 80 61.81 a.52.1.1 17806 2c82A 413 62.16 1ku2A 241 63.15 a.4.13.1,a.177.1.1 83096,83097 3ct2A 382 63.47 1rq2A 382 63.60 c.32.1.1,d.79.2.1 105048,105049 1efaA 333 64.49 a.35.1.5,c.93.1.1 17106,35691 2r2iA 198 65.15 1ayl 541 66.26 3c0bA 334 66.81 1wueA 386 69.21 c.1.11.2,d.54.1.1 114892,114893 2qiwA 255 69.22 1ywwA 85 71.64 1jpdX 324 71.89 c.1.11.2,d.54.1.1 67014,67015 2bl0B 145 72.44 2olrA 540 72.57 c.91.1.1,c.109.1.1 139140,139141 1uw4B 248 72.67 a.118.1.14 100072 1cviA 342 73.21 c.60.1.2 33989 2hivA 621 73.50 2hm2Q 89 76.12 1qd9A 124 76.31 d.79.1.1 39758 1fm2B 520 76.97 1b9bA 255 76.99 c.1.1.1 28531 2ppwA 216 78.57 2g30A 258 79.08 b.1.10.1,d.105.1.1 134546,134547 1sjdA 368 79.51 c.1.11.2,d.54.1.1 105632,105633 1n55A 251 80.60 c.1.1.1 80007 1kv5A 250 82.47 c.1.1.1 73052 1jd1A 129 82.82 d.79.1.1 62890 1rrmA 386 82.94 e.22.1.2 105081 2uykA 129 83.08 1wjpA 107 84.61 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1w2yA 229 85.36 a.204.1.1 109140 1wfxA 186 85.65 d.166.1.5 114596 2ouxA 286 86.02 2pvqA 201 86.87 1u8bA 133 87.34 2d1eA 248 89.62