# TARGET T0481 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0481.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 882 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.028 0.794 0.001 0.003 0.025 0.001 0.001 0.019 0.085 0.004 0.030 0.010 2 C 0.001 0.008 0.872 0.001 0.002 0.025 0.001 0.001 0.008 0.056 0.007 0.002 0.019 3 Q 0.001 0.007 0.114 0.001 0.045 0.739 0.001 0.001 0.004 0.044 0.041 0.002 0.003 4 S 0.001 0.001 0.014 0.001 0.026 0.941 0.001 0.001 0.001 0.004 0.012 0.001 0.001 5 N 0.001 0.001 0.002 0.001 0.012 0.980 0.001 0.001 0.001 0.001 0.003 0.001 0.001 6 Q 0.001 0.001 0.002 0.001 0.006 0.988 0.001 0.001 0.001 0.001 0.002 0.001 0.001 7 I 0.001 0.001 0.001 0.001 0.007 0.990 0.001 0.001 0.001 0.001 0.002 0.001 0.001 8 V 0.001 0.001 0.001 0.001 0.004 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 9 S 0.001 0.001 0.001 0.001 0.005 0.983 0.001 0.001 0.001 0.001 0.011 0.001 0.001 10 H 0.001 0.001 0.001 0.001 0.004 0.987 0.001 0.001 0.001 0.001 0.007 0.001 0.001 11 F 0.001 0.001 0.001 0.001 0.003 0.988 0.001 0.001 0.001 0.001 0.007 0.001 0.001 12 L 0.001 0.001 0.002 0.001 0.005 0.964 0.001 0.001 0.001 0.002 0.026 0.001 0.001 13 S 0.001 0.001 0.004 0.001 0.007 0.925 0.001 0.001 0.001 0.004 0.058 0.001 0.001 14 H 0.001 0.001 0.010 0.001 0.007 0.947 0.001 0.001 0.001 0.009 0.025 0.001 0.001 15 R 0.001 0.001 0.006 0.001 0.006 0.965 0.001 0.001 0.001 0.004 0.018 0.001 0.001 16 N 0.001 0.001 0.005 0.001 0.008 0.965 0.001 0.001 0.001 0.004 0.017 0.001 0.001 17 V 0.001 0.001 0.004 0.001 0.007 0.981 0.001 0.001 0.001 0.002 0.004 0.001 0.001 18 T 0.001 0.001 0.002 0.001 0.006 0.989 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 N 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 E 0.001 0.001 0.001 0.001 0.004 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 21 L 0.001 0.001 0.001 0.001 0.004 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 22 A 0.001 0.001 0.001 0.001 0.016 0.972 0.001 0.001 0.001 0.001 0.011 0.001 0.001 23 E 0.001 0.001 0.003 0.001 0.046 0.632 0.001 0.001 0.001 0.006 0.313 0.001 0.001 24 K 0.001 0.002 0.011 0.001 0.081 0.258 0.001 0.001 0.001 0.011 0.637 0.001 0.001 25 I 0.001 0.023 0.586 0.001 0.003 0.051 0.001 0.001 0.007 0.309 0.016 0.003 0.002 26 S 0.001 0.001 0.977 0.001 0.001 0.002 0.001 0.001 0.001 0.017 0.001 0.001 0.001 27 K 0.001 0.001 0.026 0.001 0.529 0.373 0.001 0.001 0.001 0.010 0.059 0.001 0.001 28 D 0.001 0.001 0.005 0.001 0.698 0.223 0.001 0.001 0.001 0.004 0.070 0.001 0.001 29 H 0.001 0.001 0.014 0.001 0.699 0.223 0.001 0.001 0.002 0.006 0.053 0.001 0.001 30 Y 0.001 0.016 0.147 0.002 0.151 0.438 0.001 0.001 0.027 0.043 0.164 0.003 0.007 31 S 0.002 0.032 0.200 0.001 0.056 0.193 0.001 0.001 0.008 0.078 0.414 0.008 0.008 32 Y 0.002 0.043 0.353 0.002 0.040 0.083 0.001 0.001 0.020 0.202 0.220 0.007 0.026 33 K 0.001 0.019 0.687 0.001 0.005 0.015 0.001 0.001 0.013 0.201 0.034 0.012 0.011 34 P 0.001 0.020 0.707 0.001 0.016 0.014 0.001 0.001 0.008 0.100 0.112 0.004 0.014 35 A 0.001 0.011 0.522 0.002 0.033 0.023 0.001 0.001 0.007 0.155 0.236 0.005 0.004 36 E 0.001 0.007 0.188 0.002 0.142 0.063 0.001 0.001 0.003 0.191 0.395 0.002 0.005 37 T 0.001 0.016 0.155 0.001 0.172 0.073 0.001 0.001 0.005 0.179 0.389 0.004 0.005 38 S 0.001 0.032 0.252 0.001 0.131 0.138 0.001 0.001 0.005 0.199 0.223 0.005 0.012 39 M 0.001 0.056 0.224 0.001 0.015 0.180 0.001 0.001 0.004 0.367 0.138 0.009 0.006 40 S 0.001 0.025 0.615 0.001 0.009 0.211 0.001 0.001 0.001 0.114 0.013 0.002 0.009 41 A 0.001 0.001 0.003 0.001 0.010 0.983 0.001 0.001 0.001 0.001 0.002 0.001 0.001 42 E 0.001 0.001 0.001 0.001 0.013 0.985 0.001 0.001 0.001 0.001 0.002 0.001 0.001 43 E 0.001 0.001 0.001 0.001 0.007 0.992 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 L 0.001 0.001 0.001 0.001 0.002 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 K 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.004 0.001 0.001 47 H 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.004 0.001 0.001 48 I 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 50 T 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 51 S 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.006 0.001 0.001 52 F 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 53 H 0.001 0.001 0.001 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 54 L 0.001 0.001 0.001 0.001 0.003 0.989 0.001 0.001 0.001 0.001 0.004 0.001 0.001 55 F 0.001 0.001 0.001 0.001 0.004 0.989 0.001 0.001 0.001 0.001 0.003 0.001 0.001 56 A 0.001 0.001 0.001 0.001 0.009 0.977 0.001 0.001 0.001 0.001 0.008 0.001 0.001 57 N 0.002 0.001 0.003 0.001 0.014 0.945 0.001 0.001 0.001 0.002 0.030 0.001 0.001 58 V 0.001 0.001 0.006 0.001 0.019 0.927 0.001 0.001 0.001 0.004 0.038 0.001 0.002 59 I 0.002 0.002 0.030 0.001 0.029 0.839 0.001 0.001 0.001 0.019 0.065 0.004 0.006 60 K 0.001 0.003 0.078 0.003 0.047 0.473 0.001 0.001 0.001 0.055 0.325 0.006 0.006 61 E 0.001 0.003 0.059 0.001 0.031 0.122 0.001 0.001 0.001 0.099 0.679 0.002 0.003 62 G 0.001 0.008 0.290 0.001 0.034 0.068 0.001 0.001 0.004 0.250 0.335 0.005 0.005 63 N 0.001 0.023 0.563 0.001 0.022 0.024 0.001 0.001 0.009 0.203 0.134 0.008 0.010 64 A 0.001 0.036 0.667 0.001 0.010 0.011 0.001 0.001 0.009 0.204 0.045 0.005 0.011 65 S 0.001 0.016 0.806 0.001 0.008 0.010 0.001 0.001 0.005 0.124 0.020 0.004 0.005 66 P 0.001 0.023 0.445 0.003 0.106 0.092 0.001 0.001 0.007 0.128 0.178 0.004 0.012 67 F 0.001 0.029 0.429 0.002 0.137 0.116 0.001 0.001 0.007 0.095 0.168 0.008 0.007 68 Q 0.001 0.021 0.390 0.002 0.204 0.152 0.001 0.001 0.007 0.108 0.095 0.007 0.012 69 N 0.001 0.023 0.373 0.002 0.085 0.131 0.001 0.001 0.006 0.141 0.223 0.006 0.009 70 K 0.001 0.018 0.357 0.002 0.101 0.098 0.001 0.001 0.003 0.163 0.241 0.006 0.009 71 Q 0.001 0.016 0.389 0.001 0.077 0.100 0.001 0.001 0.004 0.193 0.206 0.005 0.008 72 E 0.001 0.020 0.485 0.001 0.075 0.115 0.001 0.001 0.005 0.121 0.163 0.005 0.009 73 E 0.001 0.032 0.546 0.001 0.035 0.106 0.001 0.001 0.005 0.177 0.077 0.010 0.009 74 T 0.001 0.013 0.718 0.001 0.014 0.094 0.001 0.001 0.002 0.119 0.031 0.002 0.007 75 E 0.001 0.002 0.052 0.001 0.019 0.899 0.001 0.001 0.001 0.016 0.011 0.001 0.001 76 T 0.001 0.001 0.005 0.001 0.010 0.973 0.001 0.001 0.001 0.002 0.010 0.001 0.001 77 D 0.001 0.001 0.002 0.001 0.009 0.986 0.001 0.001 0.001 0.001 0.002 0.001 0.001 78 L 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 N 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 81 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 K 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 84 T 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.009 0.001 0.001 85 Y 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 86 T 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 T 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 A 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 92 I 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.007 0.001 0.001 93 L 0.001 0.001 0.001 0.001 0.008 0.979 0.001 0.001 0.001 0.001 0.011 0.001 0.001 94 E 0.001 0.001 0.005 0.001 0.048 0.679 0.001 0.001 0.001 0.008 0.260 0.001 0.001 95 Q 0.001 0.001 0.013 0.001 0.068 0.319 0.001 0.001 0.001 0.014 0.583 0.001 0.001 96 L 0.001 0.022 0.485 0.001 0.004 0.096 0.001 0.001 0.007 0.358 0.022 0.003 0.002 97 T 0.001 0.002 0.966 0.001 0.001 0.005 0.001 0.001 0.001 0.024 0.002 0.001 0.001 98 E 0.001 0.001 0.020 0.001 0.372 0.574 0.001 0.001 0.001 0.007 0.026 0.001 0.001 99 E 0.001 0.001 0.002 0.001 0.481 0.450 0.001 0.001 0.001 0.002 0.064 0.001 0.001 100 Q 0.001 0.001 0.009 0.001 0.498 0.444 0.001 0.001 0.001 0.004 0.044 0.001 0.001 101 L 0.001 0.006 0.051 0.001 0.136 0.724 0.001 0.001 0.005 0.017 0.056 0.001 0.002 102 D 0.001 0.009 0.071 0.004 0.104 0.428 0.001 0.001 0.002 0.045 0.328 0.002 0.005 103 R 0.001 0.011 0.082 0.005 0.095 0.286 0.001 0.001 0.009 0.076 0.418 0.008 0.007 104 E 0.009 0.017 0.286 0.005 0.061 0.207 0.002 0.002 0.035 0.095 0.170 0.010 0.102 105 I 0.017 0.013 0.529 0.010 0.018 0.060 0.003 0.002 0.051 0.076 0.040 0.130 0.050 106 D 0.023 0.025 0.482 0.010 0.014 0.059 0.005 0.003 0.076 0.067 0.059 0.073 0.106 107 L 0.022 0.042 0.423 0.010 0.024 0.068 0.006 0.006 0.056 0.122 0.065 0.052 0.103 108 T 0.010 0.025 0.471 0.018 0.029 0.067 0.003 0.003 0.041 0.138 0.061 0.071 0.062 109 S 0.005 0.024 0.342 0.006 0.080 0.054 0.002 0.002 0.015 0.112 0.261 0.016 0.081 110 A 0.002 0.007 0.145 0.022 0.127 0.037 0.001 0.001 0.005 0.129 0.498 0.018 0.010 111 F 0.001 0.004 0.080 0.003 0.030 0.014 0.001 0.001 0.002 0.160 0.697 0.005 0.004 112 G 0.001 0.008 0.287 0.003 0.024 0.006 0.001 0.001 0.002 0.289 0.363 0.004 0.013 113 R 0.002 0.025 0.542 0.002 0.010 0.011 0.001 0.001 0.021 0.211 0.031 0.132 0.011 114 K 0.002 0.109 0.514 0.001 0.005 0.014 0.002 0.001 0.028 0.066 0.048 0.003 0.207 115 V 0.001 0.092 0.599 0.003 0.002 0.027 0.001 0.001 0.021 0.086 0.004 0.157 0.007 116 T 0.001 0.011 0.804 0.001 0.001 0.048 0.001 0.001 0.006 0.042 0.002 0.002 0.082 117 G 0.001 0.001 0.003 0.001 0.006 0.986 0.001 0.001 0.001 0.001 0.002 0.001 0.001 118 R 0.001 0.001 0.001 0.001 0.004 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 A 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 120 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 121 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 122 Q 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 123 L 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.010 0.001 0.001 124 A 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 125 M 0.001 0.001 0.002 0.001 0.001 0.982 0.001 0.001 0.001 0.002 0.011 0.001 0.001 126 E 0.001 0.001 0.005 0.001 0.003 0.947 0.001 0.001 0.001 0.005 0.039 0.001 0.001 127 H 0.001 0.001 0.006 0.001 0.005 0.907 0.001 0.001 0.001 0.011 0.070 0.001 0.001 128 E 0.001 0.001 0.015 0.001 0.018 0.845 0.001 0.001 0.001 0.022 0.094 0.001 0.002 129 I 0.001 0.003 0.027 0.001 0.030 0.805 0.001 0.001 0.001 0.029 0.093 0.003 0.006 130 H 0.002 0.006 0.059 0.003 0.044 0.687 0.001 0.001 0.002 0.055 0.125 0.006 0.009 131 H 0.002 0.005 0.068 0.003 0.024 0.658 0.001 0.001 0.002 0.082 0.137 0.007 0.010 132 K 0.001 0.002 0.039 0.003 0.015 0.774 0.001 0.001 0.001 0.041 0.113 0.002 0.007 133 G 0.002 0.002 0.033 0.002 0.009 0.835 0.001 0.001 0.001 0.038 0.066 0.005 0.005 134 N 0.003 0.001 0.026 0.001 0.005 0.936 0.001 0.001 0.001 0.009 0.008 0.003 0.006 135 L 0.003 0.001 0.003 0.001 0.002 0.986 0.001 0.001 0.001 0.001 0.001 0.001 0.003 136 F 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 137 V 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 138 Y 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 139 V 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 140 R 0.001 0.001 0.001 0.001 0.003 0.984 0.001 0.001 0.001 0.001 0.011 0.001 0.001 141 E 0.001 0.001 0.001 0.001 0.010 0.965 0.001 0.001 0.001 0.001 0.022 0.001 0.001 142 M 0.001 0.001 0.011 0.001 0.008 0.507 0.001 0.001 0.001 0.029 0.443 0.001 0.001 143 G 0.001 0.001 0.056 0.001 0.005 0.036 0.001 0.001 0.001 0.043 0.857 0.001 0.001 144 H 0.001 0.007 0.849 0.001 0.004 0.016 0.001 0.001 0.007 0.089 0.020 0.004 0.003 145 T 0.001 0.012 0.811 0.001 0.003 0.009 0.001 0.001 0.027 0.107 0.017 0.004 0.009 146 E 0.001 0.025 0.783 0.001 0.014 0.015 0.001 0.001 0.026 0.092 0.027 0.003 0.012 147 L 0.001 0.013 0.746 0.004 0.034 0.030 0.001 0.001 0.032 0.101 0.026 0.006 0.007 148 P 0.001 0.022 0.496 0.004 0.111 0.092 0.001 0.001 0.041 0.111 0.095 0.010 0.016 149 F 0.001 0.029 0.393 0.004 0.139 0.156 0.001 0.002 0.035 0.110 0.106 0.008 0.017 150 Y 0.001 0.015 0.477 0.004 0.101 0.120 0.001 0.001 0.015 0.142 0.100 0.010 0.014 151 Q 0.001 0.013 0.272 0.005 0.149 0.180 0.001 0.001 0.006 0.116 0.235 0.006 0.016 152 Q 0.002 0.019 0.298 0.004 0.107 0.160 0.001 0.001 0.006 0.108 0.267 0.014 0.013 153 R 0.004 0.027 0.471 0.004 0.071 0.109 0.001 0.001 0.010 0.112 0.139 0.014 0.038 154 M 0.004 0.024 0.696 0.003 0.018 0.047 0.001 0.001 0.014 0.106 0.027 0.032 0.029