# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qe9A 178 2.26e-21 2ou6A 190 3.06e-21 1rxqA 178 8.55e-21 a.213.1.1 105118 3cexA 172 8.60e-21 2hkvA 149 1.36e-20 2p1aA 154 1.14e-15 2f22A 144 5.74e-15 a.213.1.2 132795 2yqyA 169 4.76e-11 2nsfA 261 3.96e-08 2qnlA 162 2.28e-07 1sk7A 198 3.702 a.132.1.2 105671 1o5hA 214 7.715 a.191.1.1 92497 2i09A 403 10.67 c.76.1.5,d.327.1.1 136946,136947 1zbpA 273 10.92 e.61.1.1 124861 1m45A 148 12.63 a.39.1.5 78598 2oa8A 233 12.82 2zcuA 286 13.28 1mrzA 293 13.60 b.43.5.1,c.26.1.3 91452,91453 1khvA 516 14.66 e.8.1.4 68627 1w85A 368 14.82 c.36.1.11 114335 2v6gA 364 16.03 1o98A 511 17.15 c.105.1.1,c.76.1.3 86684,86685 1xgkA 352 17.52 c.2.1.2 115286 2v7kA 361 18.17 2arhA 203 19.74 d.108.1.9 127197 1vb3A 428 22.92 c.79.1.1 119942 2hpsA 186 23.91 2incA 491 24.16 a.25.1.2 137524 3bddA 142 25.62 2nzxA 371 26.23 1uhnA 189 27.34 a.39.1.5 99399 2bm0A 691 28.07 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2fa5A 162 29.05 2jo7A 224 30.70 1k94A 165 32.49 a.39.1.8 68333 1j77A 209 32.75 a.132.1.2 62674 1w7jB 151 33.35 a.39.1.5 120690 1topA 162 34.00 a.39.1.5 17223 2qacA 146 34.43 1n55A 251 34.48 c.1.1.1 80007 1wdcB 156 35.58 a.39.1.5 17302 2scpA 174 35.72 a.39.1.5 17256 2g47A 990 37.24 1rtwA 220 37.29 a.132.1.3 97823 2a6pA 208 39.20 2opoA 86 40.31 a.39.1.10 139209 1m6jA 261 40.33 c.1.1.1 78693 2ebeA 106 41.82 1h6pA 203 41.87 a.146.1.1 60690 1kkcA 221 43.94 a.2.11.1,d.44.1.1 68660,68661 2qf2A 624 44.97 2f3yA 148 47.99 1uw4B 248 49.26 a.118.1.14 100072 1tqyA 424 51.44 c.95.1.1,c.95.1.1 107245,107246 2h2wA 312 52.01 1p68A 102 52.10 k.8.1.1 94158 2vlqB 134 54.20 1t8tA 271 54.57 c.37.1.5 106685 1rd5A 262 55.76 c.1.2.4 111772 1nijA 318 58.14 c.37.1.10,d.237.1.1 85741,85742 1j3nA 408 58.34 c.95.1.1,c.95.1.1 84074,84075 1r03A 182 59.35 a.25.1.1 104675 1kv5A 250 59.91 c.1.1.1 73052 1vrmA 325 61.97 d.96.2.1 120472 1t0qA 498 65.22 a.25.1.2 106220 1k1fA 72 65.57 a.147.1.1 68007 1sflA 238 66.94 c.1.10.1 112077 1hqvA 191 69.95 a.39.1.8 61160 2rghA 571 71.71 2c9hA 444 71.97 1e5mA 416 72.02 c.95.1.1,c.95.1.1 58973,58974 2c46A 241 72.16 1ayl 541 72.29 2gv5A 161 73.85 2oqeA 660 74.23 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1exrA 148 75.45 a.39.1.5 17299 1pl5A 142 75.54 h.1.23.1 104186 1y1xA 191 77.33 a.39.1.8 116374 1sgwA 214 79.55 c.37.1.12 105541 2i75A 320 80.78 1tqyB 415 85.36 c.95.1.1,c.95.1.1 107247,107248 2i39A 137 85.96 1a2xA 159 86.23 a.39.1.5 17251 2vdeA 460 86.25 1rm6A 769 89.07 d.41.1.1,d.133.1.1 111872,111873