# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	2.94e-22		
2hkvA	149	5.58e-22		
1rxqA	178	6.00e-22	a.213.1.1	105118
2ou6A	190	9.15e-22		
3cexA	172	1.48e-21		
2f22A	144	9.68e-16	a.213.1.2	132795
2p1aA	154	1.09e-15		
2yqyA	169	2.90e-11		
2nsfA	261	3.99e-09		
2qnlA	162	2.53e-07		
1o5hA	214	3.266	a.191.1.1	92497
2oa8A	233	4.103		
2zcuA	286	5.322		
1sk7A	198	6.135	a.132.1.2	105671
1vb3A	428	7.120	c.79.1.1	119942
1w85A	368	7.672	c.36.1.11	114335
2v7kA	361	9.845		
1o98A	511	13.07	c.105.1.1,c.76.1.3	86684,86685
2a6pA	208	13.45		
1b06A	210	13.62	a.2.11.1,d.44.1.1	15740,38737
1gesA	450	13.62	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
2i09A	403	15.18	c.76.1.5,d.327.1.1	136946,136947
1kkcA	221	15.49	a.2.11.1,d.44.1.1	68660,68661
2nzxA	371	20.02		
1xgkA	352	22.75	c.2.1.2	115286
1k94A	165	27.09	a.39.1.8	68333
1vrmA	325	27.56	d.96.2.1	120472
1khvA	516	28.93	e.8.1.4	68627
1m45A	148	29.46	a.39.1.5	78598
2gpcA	194	29.85		
2h2wA	312	31.03		
1zbpA	273	32.13	e.61.1.1	124861
1mrzA	293	32.33	b.43.5.1,c.26.1.3	91452,91453
2qacA	146	32.35		
1wdcB	156	32.46	a.39.1.5	17302
2cw2A	226	34.60		
1qgoA	264	35.55	c.92.1.2	35596
2v6gA	364	38.10		
2hpsA	186	39.34		
2awpA	198	41.26		
2nybA	192	41.55	a.2.11.1,d.44.1.1	138804,138805
2gn0A	342	44.92		
2c46A	241	45.16		
2jo7A	224	47.29		
1j77A	209	47.50	a.132.1.2	62674
1uesA	191	51.09	a.2.11.1,d.44.1.1	107798,107799
2r2iA	198	51.39		
1w7jB	151	51.71	a.39.1.5	120690
2cw3A	280	52.05		
2g47A	990	52.30		
3bevA	274	52.99		
1t0qA	498	55.14	a.25.1.2	106220
1m6jA	261	55.98	c.1.1.1	78693
1rd5A	262	57.81	c.1.2.4	111772
2i75A	320	58.26		
2rcvA	202	58.59		
2c2jA	211	59.27		
1p7gA	222	59.43	a.2.11.1,d.44.1.1	94223,94224
1pl5A	142	61.78	h.1.23.1	104186
1sflA	238	61.80	c.1.10.1	112077
1n55A	251	62.34	c.1.1.1	80007
2ebeA	106	62.67		
2bm0A	691	65.03	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
2f3yA	148	65.37		
2dp3A	257	66.01		
2incA	491	67.48	a.25.1.2	137524
3ceiA	213	69.53		
1sgwA	214	70.06	c.37.1.12	105541
1iscA	192	70.44	a.2.11.1,d.44.1.1	15733,38726
1a6zA	275	71.64	b.1.1.2,d.19.1.1	20781,38280
1mpxA	615	71.69	b.18.1.13,c.69.1.21	85041,85042
2p18A	311	72.68		
2pziA	681	73.19		
1topA	162	75.74	a.39.1.5	17223
2d5kA	156	76.79		
1lyvA	306	78.14	c.45.1.2	74348
1utg	70	80.98		
2i39A	137	81.66		
2qpxA	376	81.78		
2q4uA	272	82.42		
2yzsA	315	82.72		
2dvtA	327	85.19	c.1.9.15	131793
1kv5A	250	86.96	c.1.1.1	73052
2puzA	419	87.30