# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cexA	172	2.57e-17		
2qe9A	178	5.17e-17		
2ou6A	190	6.18e-17		
1rxqA	178	1.10e-16	a.213.1.1	105118
2hkvA	149	1.13e-16		
2f22A	144	3.49e-12	a.213.1.2	132795
2p1aA	154	6.18e-12		
2yqyA	169	1.35e-09		
2nsfA	261	5.31e-07		
2qnlA	162	7.46e-07		
2o5nA	319	6.926		
2qacA	146	17.09		
1wdcB	156	17.81	a.39.1.5	17302
2ebeA	106	18.99		
2hpsA	186	19.19		
1m45A	148	21.37	a.39.1.5	78598
1k94A	165	23.57	a.39.1.8	68333
2jo7A	224	25.02		
2i09A	403	27.46	c.76.1.5,d.327.1.1	136946,136947
2yxhA	116	27.53		
1pvaA	110	29.28	a.39.1.4	17207
1rtrA	301	30.86	a.128.1.1	97820
1sk7A	198	31.86	a.132.1.2	105671
2qf2A	624	32.68		
2h2wA	312	32.86		
1zn6A	227	34.00	d.303.1.1	125373
2z1aA	552	34.19		
2bm0A	691	38.44	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
1ix9A	205	40.42	a.2.11.1,d.44.1.1	76899,76900
3b9eA	584	43.43		
1ywwA	85	48.45		
1hqvA	191	48.77	a.39.1.8	61160
2dvtA	327	48.93	c.1.9.15	131793
1topA	162	52.02	a.39.1.5	17223
1yr2A	741	52.39		
1vpkA	378	52.73	d.131.1.1,d.131.1.1,d.131.1.1	113963,113964,113965
2j5bA	348	58.52		
1y7tA	327	60.75	c.2.1.5,d.162.1.1	122718,122719
1gesA	450	60.82	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
1khvA	516	62.47	e.8.1.4	68627
1j99A	293	62.47	c.37.1.5	71618
2arhA	203	62.54	d.108.1.9	127197
2gt1A	326	63.08		
1i9sA	210	63.40	c.45.1.1	62099
2bl0B	145	64.13		
1o98A	511	68.93	c.105.1.1,c.76.1.3	86684,86685
2c46A	241	70.91		
1a79A	171	71.34	c.52.2.1,d.75.1.1	33340,39739
2icjA	233	71.48		
2opoA	86	74.96	a.39.1.10	139209
3bbyA	215	75.61		
2q1zA	184	75.89		
2gpcA	194	76.31		
2prdA	174	76.59	b.40.5.1	25435
1ayl	541	77.37		
1uocA	289	77.63	c.55.3.9	99686
1jjvA	206	78.08	c.37.1.1	71698
1qyrA	252	78.30	c.66.1.24	104657
2o5gA	148	86.89