# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qe9A 178 3.47e-21 2hkvA 149 1.59e-20 3cexA 172 2.34e-20 1rxqA 178 2.43e-20 a.213.1.1 105118 2ou6A 190 6.30e-20 2p1aA 154 6.66e-15 2f22A 144 1.06e-14 a.213.1.2 132795 2yqyA 169 9.14e-11 2nsfA 261 8.35e-09 2qnlA 162 2.05e-06 1sk7A 198 3.136 a.132.1.2 105671 2oa8A 233 5.274 2hpsA 186 6.184 2rduA 387 6.976 1o5hA 214 7.157 a.191.1.1 92497 3bf0A 593 7.427 2dvtA 327 9.538 c.1.9.15 131793 1e9gA 286 9.708 b.40.5.1 59393 2nutA 769 10.44 1sflA 238 11.78 c.1.10.1 112077 2ntiA 249 13.45 2g47A 990 13.62 2fkzA 155 14.80 a.25.1.1 133688 2j5bA 348 15.26 3bjsA 428 15.81 2v6gA 364 16.11 1zbpA 273 16.76 e.61.1.1 124861 1goxA 369 18.31 c.1.4.1 28607 1o98A 511 19.72 c.105.1.1,c.76.1.3 86684,86685 2zcuA 286 20.57 1gox 370 20.82 1g5hA 454 20.88 c.51.1.1,d.104.1.1 60270,60271 1khvA 516 21.08 e.8.1.4 68627 2olnA 397 21.61 2c46A 241 21.67 1lk2A 274 23.38 b.1.1.2,d.19.1.1 91056,91057 1xdpA 687 25.28 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1kkcA 221 25.78 a.2.11.1,d.44.1.1 68660,68661 1t7vA 278 26.24 b.1.1.2,d.19.1.1 112302,112303 1uu1A 335 27.41 c.67.1.1 99993 1k7hA 476 27.42 c.76.1.1 72101 2ahfA 377 28.90 3b85A 208 30.92 2gojA 197 32.23 1tb3A 352 32.64 c.1.4.1 119205 2gv5A 161 32.75 1qwnA 1045 32.99 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1c1dA 355 33.01 c.2.1.7,c.58.1.1 30270,33918 2acvA 463 36.43 3c1oA 321 37.84 2nybA 192 38.91 a.2.11.1,d.44.1.1 138804,138805 2p3rA 510 39.48 c.55.1.4,c.55.1.4 139471,139472 2je6A 277 40.72 2p18A 311 41.70 1bm9A 122 41.93 a.4.5.7 16116 3bwaA 276 42.97 1mo9A 523 43.27 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2furA 209 44.02 b.45.1.1 134185 2pgeA 377 44.14 1w85A 368 44.27 c.36.1.11 114335 2bvfA 459 45.38 1a79A 171 45.69 c.52.2.1,d.75.1.1 33340,39739 2cfuA 658 45.81 2qpxA 376 45.87 2ovlA 371 46.83 2fh5B 214 46.85 c.37.1.8 133478 2qh8A 302 47.98 1rd5A 262 49.08 c.1.2.4 111772 2gp6A 434 50.93 2nzxA 371 51.35 2p8bA 369 51.78 2d1gA 498 52.08 2jc5A 259 52.34 1m6jA 261 52.86 c.1.1.1 78693 1hqvA 191 54.63 a.39.1.8 61160 1x31B 404 55.23 1p7gA 222 55.57 a.2.11.1,d.44.1.1 94223,94224 2yzsA 315 55.73 1j3nA 408 55.74 c.95.1.1,c.95.1.1 84074,84075 2scpA 174 57.46 a.39.1.5 17256 1v4aA 440 57.52 a.24.16.4,d.218.1.9 108350,108351 1wx1A 335 57.98 1eg5A 384 59.14 c.67.1.3 34429 2hfsA 332 59.73 1mdlA 359 59.91 c.1.11.2,d.54.1.1 29247,38891 1s6cA 183 59.95 a.39.1.5 98594 2qacA 146 60.10 1ad1A 266 60.63 c.1.21.1 29668 1ju2A 536 60.87 c.3.1.2,d.16.1.1 77169,77170 2fh7A 595 62.86 2dpiA 420 63.03 d.240.1.1,e.8.1.7 131612,131613 2jo7A 224 64.00 1hyoA 421 64.31 b.34.8.1,d.177.1.1 59001,59002 1qgrA 876 65.06 a.118.1.1 19119 2vhxA 377 65.65 1jx4A 352 65.84 d.240.1.1,e.8.1.7 90378,90379 1y1xA 191 67.20 a.39.1.8 116374 2z3yA 662 67.42 1topA 162 67.63 a.39.1.5 17223 3cb2A 475 68.17 1auiB 169 68.67 a.39.1.5 17325 1wy5A 317 68.92 c.26.2.5,d.229.1.1 121428,121429 2zfdA 226 69.48 1iscA 192 71.12 a.2.11.1,d.44.1.1 15733,38726 2rcvA 202 72.80 1a6zA 275 72.96 b.1.1.2,d.19.1.1 20781,38280 1qgoA 264 73.25 c.92.1.2 35596 2q4uA 272 73.38 1nwzA 125 73.58 d.110.3.1 86370 1qw9A 502 73.60 b.71.1.2,c.1.8.3 96466,96467 1ayl 541 73.66 1d8wA 426 73.82 c.1.15.2 29394 1wdcB 156 75.73 a.39.1.5 17302 2vlqB 134 76.05 1xreA 217 76.54 2jg2A 422 78.13 2o18A 340 78.81 1jdwA 423 79.26 d.126.1.2 41129 1pj5A 830 79.36 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1hz4A 373 79.37 a.118.8.2 65960 1ew2A 513 80.39 c.76.1.1 59525 1mwmA 320 80.97 c.55.1.1,c.55.1.1 79580,79581 1mrzA 293 82.33 b.43.5.1,c.26.1.3 91452,91453 1bia 321 82.51 1uw4B 248 82.99 a.118.1.14 100072 1udxA 416 83.43 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1vdkA 466 85.12 a.127.1.1 100561 1dzlA 505 85.47 b.121.6.1 23586 1ix9A 205 86.53 a.2.11.1,d.44.1.1 76899,76900 3bevA 274 87.69 1n55A 251 88.64 c.1.1.1 80007