# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qe9A 178 2.68e-21 2hkvA 149 1.88e-20 3cexA 172 2.09e-20 2ou6A 190 2.96e-20 1rxqA 178 3.14e-20 a.213.1.1 105118 2p1aA 154 3.06e-15 2f22A 144 5.43e-15 a.213.1.2 132795 2yqyA 169 6.74e-11 2nsfA 261 1.05e-07 2qnlA 162 7.80e-07 1sk7A 198 4.456 a.132.1.2 105671 1o5hA 214 5.288 a.191.1.1 92497 1vb3A 428 8.722 c.79.1.1 119942 2oa8A 233 12.48 1mrzA 293 14.46 b.43.5.1,c.26.1.3 91452,91453 1khvA 516 14.86 e.8.1.4 68627 2v7kA 361 14.93 2incA 491 16.08 a.25.1.2 137524 1o98A 511 18.39 c.105.1.1,c.76.1.3 86684,86685 2hpsA 186 19.52 2i09A 403 20.49 c.76.1.5,d.327.1.1 136946,136947 1m45A 148 20.67 a.39.1.5 78598 2zcuA 286 20.81 1zbpA 273 21.31 e.61.1.1 124861 1wdcB 156 22.42 a.39.1.5 17302 1kkcA 221 23.13 a.2.11.1,d.44.1.1 68660,68661 1b06A 210 23.43 a.2.11.1,d.44.1.1 15740,38737 1t0qA 498 26.23 a.25.1.2 106220 2p18A 311 26.36 2cw2A 226 26.43 2cw3A 280 28.20 2v6gA 364 28.39 2nybA 192 30.74 a.2.11.1,d.44.1.1 138804,138805 2h2wA 312 32.93 2qacA 146 32.99 2awpA 198 33.71 1j3nA 408 33.92 c.95.1.1,c.95.1.1 84074,84075 1k94A 165 37.33 a.39.1.8 68333 2g47A 990 38.11 1m6jA 261 38.13 c.1.1.1 78693 1gesA 450 38.41 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2nzxA 371 41.42 2opoA 86 41.61 a.39.1.10 139209 2gpcA 194 42.10 2arhA 203 43.40 d.108.1.9 127197 1topA 162 43.70 a.39.1.5 17223 1w7jB 151 43.87 a.39.1.5 120690 1sflA 238 44.34 c.1.10.1 112077 2i75A 320 44.78 1rd5A 262 45.83 c.1.2.4 111772 1w85A 368 46.85 c.36.1.11 114335 1n55A 251 46.89 c.1.1.1 80007 1xreA 217 47.25 2a6pA 208 48.22 2bm0A 691 48.50 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2gojA 197 48.69 2r2iA 198 50.12 1c1dA 355 51.04 c.2.1.7,c.58.1.1 30270,33918 2jo7A 224 53.08 1iscA 192 55.50 a.2.11.1,d.44.1.1 15733,38726 1lk2A 274 56.03 b.1.1.2,d.19.1.1 91056,91057 1r03A 182 56.50 a.25.1.1 104675 1uhnA 189 56.65 a.39.1.5 99399 1nijA 318 57.84 c.37.1.10,d.237.1.1 85741,85742 1pl5A 142 58.02 h.1.23.1 104186 1p7gA 222 58.24 a.2.11.1,d.44.1.1 94223,94224 1y1xA 191 60.82 a.39.1.8 116374 2ebeA 106 63.67 1rtrA 301 65.45 a.128.1.1 97820 2pziA 681 67.41 1ix9A 205 67.58 a.2.11.1,d.44.1.1 76899,76900 2vlqB 134 67.90 2cghA 268 68.02 3bevA 274 70.56 1tqyA 424 71.16 c.95.1.1,c.95.1.1 107245,107246 2scpA 174 78.02 a.39.1.5 17256 2o5gA 148 80.16 2rcvA 202 80.32 1uesA 191 83.67 a.2.11.1,d.44.1.1 107798,107799 1vimA 200 83.97 c.80.1.3 100758 1o6yA 299 84.18 d.144.1.7 81106 1k1fA 72 85.16 a.147.1.1 68007 2gwhA 298 85.41 2gv5A 161 86.28 1kv5A 250 86.93 c.1.1.1 73052 2b8nA 429 87.15 c.118.1.1 128093 1vhwA 253 87.91 c.56.2.1 100706 2glcA 342 88.17 1uerA 191 88.83 a.2.11.1,d.44.1.1 107790,107791