# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qe9A	178	1.69e-22		
2ou6A	190	5.06e-22		
2hkvA	149	6.21e-22		
3cexA	172	6.73e-22		
1rxqA	178	8.56e-22	a.213.1.1	105118
2p1aA	154	5.35e-16		
2f22A	144	1.00e-15	a.213.1.2	132795
2yqyA	169	2.74e-11		
2nsfA	261	6.09e-08		
2qnlA	162	2.67e-07		
1sk7A	198	4.835	a.132.1.2	105671
1w85A	368	5.372	c.36.1.11	114335
2oa8A	233	9.501		
1vb3A	428	9.724	c.79.1.1	119942
1o5hA	214	9.817	a.191.1.1	92497
1o98A	511	10.94	c.105.1.1,c.76.1.3	86684,86685
1khvA	516	13.52	e.8.1.4	68627
2jo7A	224	16.30		
1wdcB	156	17.35	a.39.1.5	17302
2zcuA	286	18.49		
1m45A	148	21.78	a.39.1.5	78598
2r2iA	198	22.74		
1k94A	165	25.20	a.39.1.8	68333
2i09A	403	25.30	c.76.1.5,d.327.1.1	136946,136947
1zbpA	273	28.91	e.61.1.1	124861
2v7kA	361	28.95		
1nijA	318	29.15	c.37.1.10,d.237.1.1	85741,85742
1mrzA	293	29.46	b.43.5.1,c.26.1.3	91452,91453
1pvaA	110	29.50	a.39.1.4	17207
3bddA	142	31.54		
1j3nA	408	31.87	c.95.1.1,c.95.1.1	84074,84075
1kkcA	221	33.19	a.2.11.1,d.44.1.1	68660,68661
1h6pA	203	34.84	a.146.1.1	60690
2v6gA	364	35.27		
2p18A	311	36.69		
2qacA	146	37.02		
2nzxA	371	38.46		
1rtwA	220	38.57	a.132.1.3	97823
2cw3A	280	40.19		
1w7jB	151	40.30	a.39.1.5	120690
1a2xA	159	41.41	a.39.1.5	17251
2h2wA	312	42.32		
1topA	162	44.67	a.39.1.5	17223
1j77A	209	45.44	a.132.1.2	62674
1rd5A	262	46.72	c.1.2.4	111772
1vrmA	325	47.88	d.96.2.1	120472
1gesA	450	51.34	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
1uhnA	189	52.05	a.39.1.5	99399
1sflA	238	53.98	c.1.10.1	112077
2dp3A	257	63.65		
2e6rA	92	64.02		
1pl5A	142	64.41	h.1.23.1	104186
2gp6A	434	64.68		
2fa5A	162	65.73		
1exrA	148	65.78	a.39.1.5	17299
1qgoA	264	65.92	c.92.1.2	35596
1m6jA	261	66.37	c.1.1.1	78693
2jc5A	259	67.22		
1p68A	102	67.92	k.8.1.1	94158
2f3yA	148	68.62		
2vlqB	134	70.67		
1b06A	210	74.94	a.2.11.1,d.44.1.1	15740,38737
1y1xA	191	75.61	a.39.1.8	116374
2incA	491	76.45	a.25.1.2	137524
2g47A	990	76.83		
1lk2A	274	79.05	b.1.1.2,d.19.1.1	91056,91057
2hpsA	186	79.12		
1tqyB	415	79.28	c.95.1.1,c.95.1.1	107247,107248
1t8tA	271	79.40	c.37.1.5	106685
1uw4B	248	79.63	a.118.1.14	100072
2gv5A	161	79.70		
2ebeA	106	79.80		
1hz4A	373	83.63	a.118.8.2	65960
1jx4A	352	83.98	d.240.1.1,e.8.1.7	90378,90379
1z6rA	406	84.16	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1qwrA	319	84.43	b.82.1.3	96491
1bm9A	122	87.34	a.4.5.7	16116
1lnsA	763	87.49	a.40.2.1,b.18.1.13,c.69.1.21	78101,78102,78103