# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qe9A 178 1.37e-21 2ou6A 190 1.67e-21 1rxqA 178 1.72e-21 a.213.1.1 105118 2hkvA 149 1.78e-21 3cexA 172 3.05e-21 2p1aA 154 1.06e-15 2f22A 144 1.22e-15 a.213.1.2 132795 2yqyA 169 2.75e-11 2nsfA 261 3.05e-08 2qnlA 162 1.57e-07 2oa8A 233 5.333 1sk7A 198 7.098 a.132.1.2 105671 1o5hA 214 8.658 a.191.1.1 92497 2zcuA 286 9.337 1o98A 511 11.20 c.105.1.1,c.76.1.3 86684,86685 2v7kA 361 12.66 1vb3A 428 13.24 c.79.1.1 119942 1b06A 210 16.16 a.2.11.1,d.44.1.1 15740,38737 1p7gA 222 18.38 a.2.11.1,d.44.1.1 94223,94224 1w85A 368 19.88 c.36.1.11 114335 1vrmA 325 20.72 d.96.2.1 120472 2i09A 403 21.08 c.76.1.5,d.327.1.1 136946,136947 1wdcB 156 23.29 a.39.1.5 17302 1khvA 516 23.70 e.8.1.4 68627 2jo7A 224 25.59 3bddA 142 26.40 1ix9A 205 26.89 a.2.11.1,d.44.1.1 76899,76900 1rtwA 220 27.62 a.132.1.3 97823 1rd5A 262 28.41 c.1.2.4 111772 2nzxA 371 30.09 2cw2A 226 31.13 1mrzA 293 31.76 b.43.5.1,c.26.1.3 91452,91453 1m45A 148 32.39 a.39.1.5 78598 2v6gA 364 33.07 2incA 491 33.12 a.25.1.2 137524 1sflA 238 33.19 c.1.10.1 112077 2gykB 134 35.24 d.4.1.1 135857 2hpsA 186 35.35 2gpcA 194 36.29 1gesA 450 36.50 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2vlqB 134 36.58 2cw3A 280 37.15 2g47A 990 37.92 2p18A 311 38.08 1zbpA 273 38.93 e.61.1.1 124861 1kkcA 221 39.06 a.2.11.1,d.44.1.1 68660,68661 2qacA 146 40.09 2arhA 203 42.29 d.108.1.9 127197 1uesA 191 44.08 a.2.11.1,d.44.1.1 107798,107799 2ebeA 106 44.17 2rcvA 202 44.18 2h2wA 312 44.70 2a6pA 208 44.89 2nq2C 253 45.03 1j3nA 408 47.47 c.95.1.1,c.95.1.1 84074,84075 2r2iA 198 47.79 1jx4A 352 47.82 d.240.1.1,e.8.1.7 90378,90379 1k94A 165 48.84 a.39.1.8 68333 2c46A 241 50.47 1topA 162 50.90 a.39.1.5 17223 1uw4B 248 50.94 a.118.1.14 100072 1a2xA 159 52.16 a.39.1.5 17251 1sgwA 214 53.47 c.37.1.12 105541 1z6rA 406 53.85 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1m6jA 261 56.14 c.1.1.1 78693 2bm0A 691 57.00 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1uhnA 189 57.24 a.39.1.5 99399 1lk2A 274 57.85 b.1.1.2,d.19.1.1 91056,91057 1n55A 251 58.73 c.1.1.1 80007 2dp3A 257 62.20 1xgkA 352 63.07 c.2.1.2 115286 2q4uA 272 64.43 1w7jB 151 66.14 a.39.1.5 120690 1p68A 102 67.31 k.8.1.1 94158 2b8nA 429 67.45 c.118.1.1 128093 1pvaA 110 70.12 a.39.1.4 17207 1nijA 318 73.67 c.37.1.10,d.237.1.1 85741,85742 1utg 70 74.44 2fbiA 142 75.80 a.4.5.28 133246 1xuqA 212 75.89 2f3yA 148 76.54 2yquA 455 77.65 2gv5A 161 77.82 2awpA 198 77.84 1t0qA 498 78.88 a.25.1.2 106220 2i39A 137 78.90 1pl5A 142 79.22 h.1.23.1 104186 3bevA 274 82.41 1x3lA 440 82.76 2jejA 358 83.44 d.240.1.1,e.8.1.7 138284,138285 1uerA 191 85.31 a.2.11.1,d.44.1.1 107790,107791 1exrA 148 87.21 a.39.1.5 17299 2nybA 192 87.37 a.2.11.1,d.44.1.1 138804,138805 1qgoA 264 87.52 c.92.1.2 35596 1bm9A 122 89.02 a.4.5.7 16116