# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cexA	172	3.13e-23		
2hkvA	149	3.43e-23		
1rxqA	178	5.47e-23	a.213.1.1	105118
2qe9A	178	2.81e-22		
2ou6A	190	2.92e-22		
2f22A	144	1.15e-15	a.213.1.2	132795
2p1aA	154	2.75e-14		
2yqyA	169	3.22e-11		
2nsfA	261	2.61e-09		
2qnlA	162	4.97e-08		
1sk7A	198	2.361	a.132.1.2	105671
2o5nA	319	6.428		
1k94A	165	9.002	a.39.1.8	68333
2hpsA	186	13.00		
2jo7A	224	14.38		
1rtrA	301	14.63	a.128.1.1	97820
2pg0A	385	20.94		
2cw3A	280	25.00		
2yquA	455	26.50		
2rcvA	202	26.60		
2qacA	146	27.21		
1gesA	450	27.40	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
1qyrA	252	31.22	c.66.1.24	104657
2dvtA	327	32.65	c.1.9.15	131793
1zbpA	273	33.36	e.61.1.1	124861
2qf2A	624	33.56		
2j5bA	348	33.96		
1j77A	209	34.38	a.132.1.2	62674
1rcwA	231	34.78	a.132.1.4	97299
2q4uA	272	36.39		
3bevA	274	41.95		
2nybA	192	47.19	a.2.11.1,d.44.1.1	138804,138805
3b9eA	584	50.34		
2rkvA	451	52.19		
1hqvA	191	53.87	a.39.1.8	61160
2arhA	203	56.03	d.108.1.9	127197
1kkcA	221	56.11	a.2.11.1,d.44.1.1	68660,68661
1a3qA	285	56.51	b.1.18.1,b.2.5.3	21932,22447
2oolA	337	57.76		
1t3yA	141	58.39	d.109.1.2	119141
1lk2A	274	61.26	b.1.1.2,d.19.1.1	91056,91057
1pvaA	110	61.47	a.39.1.4	17207
1ix9A	205	64.65	a.2.11.1,d.44.1.1	76899,76900
1y1xA	191	67.95	a.39.1.8	116374
1w9pA	433	69.06	c.1.8.5,d.26.3.1	114412,114413
2ebeA	106	69.82		
3cjdA	198	70.81		
1kb9G	125	72.20	f.27.1.1	77322
1fkmA	396	72.33	a.69.2.1,a.69.2.1	18315,18316
1j99A	293	74.49	c.37.1.5	71618
1xh3A	276	75.56	b.1.1.2,d.19.1.1	115287,115288
2z1aA	552	75.67		
2do9A	115	75.82		
2d8aA	348	78.82		
2awpA	198	78.85		
2cw2A	226	80.93		
1uerA	191	85.21	a.2.11.1,d.44.1.1	107790,107791
1v3yA	192	85.41	d.167.1.1	113508
2p1gA	249	85.82		
1siqA	392	86.21	a.29.3.1,e.6.1.1	105585,105586
1kjvA	284	87.74	b.1.1.2,d.19.1.1	77421,77422
1khvA	516	88.77	e.8.1.4	68627
2bqxA	173	89.08