# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3cexA 172 1.39e-21 2hkvA 149 1.64e-21 2qe9A 178 2.01e-21 2ou6A 190 1.51e-20 1rxqA 178 8.82e-20 a.213.1.1 105118 2f22A 144 3.30e-15 a.213.1.2 132795 2p1aA 154 1.16e-14 2yqyA 169 8.02e-11 2nsfA 261 1.42e-08 2qnlA 162 1.58e-07 2o5nA 319 7.432 2nybA 192 7.484 a.2.11.1,d.44.1.1 138804,138805 1b06A 210 8.413 a.2.11.1,d.44.1.1 15740,38737 1guxB 152 8.787 a.74.1.3 18389 3ceiA 213 9.916 2gojA 197 10.05 2awpA 198 12.13 2rcvA 202 13.28 1kkcA 221 14.55 a.2.11.1,d.44.1.1 68660,68661 1my6A 199 15.50 a.2.11.1,d.44.1.1 85232,85233 1uerA 191 15.64 a.2.11.1,d.44.1.1 107790,107791 2jo7A 224 15.94 1iscA 192 15.94 a.2.11.1,d.44.1.1 15733,38726 1p7gA 222 16.80 a.2.11.1,d.44.1.1 94223,94224 1zbpA 273 17.78 e.61.1.1 124861 1rtrA 301 17.82 a.128.1.1 97820 1uesA 191 18.44 a.2.11.1,d.44.1.1 107798,107799 2ebeA 106 18.77 1sk7A 198 19.36 a.132.1.2 105671 2arhA 203 20.49 d.108.1.9 127197 1ppjF 110 20.67 f.27.1.1 104262 1ix9A 205 20.73 a.2.11.1,d.44.1.1 76899,76900 2gpcA 194 21.15 1o6yA 299 22.86 d.144.1.7 81106 1pl4A 198 23.06 a.2.11.1,d.44.1.1 94854,94855 2j5bA 348 25.58 1k94A 165 27.36 a.39.1.8 68333 2q4uA 272 28.33 1xuqA 212 29.31 2e6rA 92 32.24 2i6lA 320 32.88 2cw3A 280 33.15 2hpsA 186 35.73 1qyrA 252 36.02 c.66.1.24 104657 1bsmA 201 36.87 a.2.11.1,d.44.1.1 15780,38743 1pvaA 110 37.78 a.39.1.4 17207 1xreA 217 38.88 3b9eA 584 38.89 1gesA 450 39.75 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1kb9G 125 42.76 f.27.1.1 77322 2qf2A 624 48.86 1wdcB 156 50.27 a.39.1.5 17302 2daqA 110 50.88 b.34.9.2 131354 2puzA 419 52.10 2yxhA 116 56.98 1csn 298 57.88 1ccwB 483 58.04 c.1.19.2 29646 2c46A 241 58.15 2h2wA 312 58.16 1bm9A 122 59.85 a.4.5.7 16116 2bm0A 691 63.08 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1mc0A 368 66.15 d.110.2.1,d.110.2.1 78937,78938 1m45A 148 67.90 a.39.1.5 78598 1fx7A 230 69.25 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1pzxA 289 69.44 c.119.1.1 95484 1rp3A 239 70.55 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1ymiA 334 72.04 1n00A 321 72.37 a.65.1.1 85241 1f5vA 240 72.69 d.90.1.1 40255 1ddzA 496 78.59 c.53.2.1,c.53.2.1 33372,33373 1uocA 289 79.04 c.55.3.9 99686 1cojA 212 80.57 a.2.11.1,d.44.1.1 15737,38734 1wy5A 317 81.14 c.26.2.5,d.229.1.1 121428,121429 1j3bA 529 83.27 c.91.1.1,c.109.1.1 77071,77072 2q28A 564 83.29 1unfX 238 84.48 a.2.11.1,d.44.1.1 113314,113315 2bbhA 269 85.08 d.328.1.1 128266 2qacA 146 85.12 3cx5G 126 85.94 2v7kA 361 86.51 1a2xA 159 87.80 a.39.1.5 17251 1iejA 332 88.09 c.94.1.2 62328 1sxvA 172 88.67 1hm6A 346 89.17 a.65.1.1 18147 2c31A 568 89.41 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706